Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_C16
         (510 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0106 - 13460882-13462086,13463452-13463629                       28   5.0  
01_06_0373 - 28841462-28842850                                         28   5.0  
07_01_0021 - 133549-133628,133780-133824,133850-133858,134513-13...    27   6.6  
01_05_0416 + 21956050-21956512,21958001-21958065,21958772-219589...    27   6.6  
10_08_0584 + 18971761-18971834,18971852-18973133,18973197-189745...    27   8.8  

>07_03_0106 - 13460882-13462086,13463452-13463629
          Length = 460

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -2

Query: 137 HQLWVVQSPPADRAVRLSREPLEPGPPIQR 48
           H+L V+   PA R  R +  PL P P   R
Sbjct: 127 HRLRVIDGDPAPRLARTTAAPLSPDPAFLR 156


>01_06_0373 - 28841462-28842850
          Length = 462

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -2

Query: 131 LWVVQSPPADRAVRLSREPLEP 66
           LWVV+SPP+D   +   +P EP
Sbjct: 286 LWVVRSPPSDDPAKKFDKPPEP 307


>07_01_0021 -
           133549-133628,133780-133824,133850-133858,134513-134656,
           140098-140391,141324-141908,142034-142198,142364-142406
          Length = 454

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 414 LFMRCHLLIVINECCESRTAENIV 343
           L   CH +  +NECC SRT +N +
Sbjct: 185 LLEACHKIDPVNECC-SRTCQNAI 207


>01_05_0416 +
           21956050-21956512,21958001-21958065,21958772-21958933,
           21959006-21959107
          Length = 263

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 22/75 (29%), Positives = 34/75 (45%)
 Frame = -2

Query: 242 RELAQVLQQNNSNRCCRLHRSQCPSRRGMKSGIEYHQLWVVQSPPADRAVRLSREPLEPG 63
           ++L   L     +R  + HRS+  ++ G  S   +  L   +SP   R    SR    P 
Sbjct: 2   QQLRLRLNTKAQHRRGKTHRSKLGTKIGPHSHRAHEALARHKSPDFRRTGPPSRTNTSPQ 61

Query: 62  PPIQRESTGNAYRRP 18
           PP  ++ST  + RRP
Sbjct: 62  PP--KDSTARSGRRP 74


>10_08_0584 + 18971761-18971834,18971852-18973133,18973197-18974509,
            18993885-18993935,18994674-18994829,18995048-18995123,
            18995317-18995364,18995445-18995489,18995580-18995679,
            18995923-18995968,18996115-18996176,18996257-18996355,
            18996536-18996609,18996721-18996790,18997074-18997162,
            18997327-18997404
          Length = 1220

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 18/61 (29%), Positives = 25/61 (40%)
 Frame = -2

Query: 188  HRSQCPSRRGMKSGIEYHQLWVVQSPPADRAVRLSREPLEPGPPIQRESTGNAYRRPLVA 9
            H     +R G + G E  +      PP  RA  L   P  PG P  ++  G    RP ++
Sbjct: 819  HPHPVSTRPGREQGGEAPEPNDGPRPPTTRAGPLPACPTVPGAPDPQDGPGATAGRPRLS 878

Query: 8    P 6
            P
Sbjct: 879  P 879


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,274,159
Number of Sequences: 37544
Number of extensions: 201922
Number of successful extensions: 495
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 495
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1095026320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)