Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_C15
         (370 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.13c |rpl1601||60S ribosomal protein L13/L16|Schizosaccha...    76   2e-15
SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein L13/L16|Schiz...    73   1e-14
SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein L13/L16|Schizos...    62   2e-11
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    29   0.17 
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po...    27   0.70 
SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces po...    27   0.93 
SPAC22E12.17c |glo3||ARF GTPase activating protein|Schizosacchar...    25   2.8  
SPAC19G12.09 |||NADH/NADPH dependent indole-3-acetaldehyde reduc...    25   2.8  
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    25   4.9  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    24   6.5  
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces...    24   8.6  
SPAC31G5.08 |ups1|ups|uroporphyrinogen-III synthase Ups1|Schizos...    24   8.6  
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||...    24   8.6  

>SPBC839.13c |rpl1601||60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 197

 Score = 75.8 bits (178), Expect = 2e-15
 Identities = 39/73 (53%), Positives = 47/73 (64%)
 Frame = +3

Query: 111 LKPGRKYCHVGRLSHEVGWKYRDVVRKLEDKRKVKAIKLISYERKLKKITKEAGEKVAKA 290
           LKPGRKYC VGRLS EVGWKY D+V KLE++RKVK+     Y+ KL K  K A    AK 
Sbjct: 130 LKPGRKYCTVGRLSSEVGWKYNDIVAKLEERRKVKSAAF--YQAKLAKQKKIAS---AKE 184

Query: 291 TAPFTTVVQSYGY 329
            +P    +  +GY
Sbjct: 185 ASPVNQKLSQFGY 197



 Score = 25.0 bits (52), Expect = 3.7
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 14  ALRRLRTYDGCPPPFD 61
           AL  L+  +G PPPFD
Sbjct: 99  ALEHLQAVEGIPPPFD 114


>SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score = 73.3 bits (172), Expect = 1e-14
 Identities = 36/60 (60%), Positives = 42/60 (70%)
 Frame = +3

Query: 111 LKPGRKYCHVGRLSHEVGWKYRDVVRKLEDKRKVKAIKLISYERKLKKITKEAGEKVAKA 290
           LKPGRKYC VGRLS EVGWKY D+V KLE++RKVK+     Y+ KL K  K A  K A +
Sbjct: 130 LKPGRKYCTVGRLSSEVGWKYSDIVSKLEERRKVKSAAF--YQAKLAKQKKIASAKAASS 187



 Score = 25.0 bits (52), Expect = 3.7
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 14  ALRRLRTYDGCPPPFD 61
           AL  L+  +G PPPFD
Sbjct: 99  ALEHLQAVEGIPPPFD 114


>SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 197

 Score = 62.5 bits (145), Expect = 2e-11
 Identities = 24/36 (66%), Positives = 32/36 (88%)
 Frame = +3

Query: 111 LKPGRKYCHVGRLSHEVGWKYRDVVRKLEDKRKVKA 218
           LKP RKYC +GRLS EVGWKY+++V KLE++RK+K+
Sbjct: 130 LKPSRKYCTIGRLSSEVGWKYKNIVSKLEERRKIKS 165



 Score = 25.8 bits (54), Expect = 2.1
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +2

Query: 14  ALRRLRTYDGCPPPFD 61
           AL+ L+  +G PPPFD
Sbjct: 99  ALKNLQALEGIPPPFD 114


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1919

 Score = 29.5 bits (63), Expect = 0.17
 Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +3

Query: 198 DKRKVKAIKLISYERKLKKITKEAGEKVAKATA-PFTTVVQSYG 326
           DKR+   I L++YE++L+ + K   E   +    P  ++++ YG
Sbjct: 18  DKRETIYIDLLNYEKQLRNLNKNTREDSLQTNLNPLLSLIKKYG 61


>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 27.5 bits (58), Expect = 0.70
 Identities = 18/45 (40%), Positives = 22/45 (48%)
 Frame = +3

Query: 144 RLSHEVGWKYRDVVRKLEDKRKVKAIKLISYERKLKKITKEAGEK 278
           R S E   K  D   K E+KR+ K  K    E+K KK  KE  +K
Sbjct: 428 RKSVESSEKDEDEAAKKEEKRRKKEAKKEKKEKKEKKEKKEKKKK 472


>SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 262

 Score = 27.1 bits (57), Expect = 0.93
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +2

Query: 203 EESEGHQADIL*EETQENHQGSRREGGESDG 295
           EE E  +AD + EE  E  +G   E  E DG
Sbjct: 176 EEEEEEEADEMEEEFDEEGEGDEEEEEEDDG 206


>SPAC22E12.17c |glo3||ARF GTPase activating
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 486

 Score = 25.4 bits (53), Expect = 2.8
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = -2

Query: 126 YGQASVRQNTRSAAGTTTRRLLSNGGGQPSYVR 28
           +GQ +   N R+ A    R L  N    P+Y R
Sbjct: 348 FGQFAAASNARAKAAAKARELKKNEVNAPTYAR 380


>SPAC19G12.09 |||NADH/NADPH dependent indole-3-acetaldehyde
           reductase AKR3C2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 284

 Score = 25.4 bits (53), Expect = 2.8
 Identities = 9/34 (26%), Positives = 16/34 (47%)
 Frame = -2

Query: 201 CPQVYGQRHGTSIRLRARDVPHDSIYGQASVRQN 100
           C +VYG      + L+  +VP   ++  + V  N
Sbjct: 50  CAEVYGNEEEVGVALKEANVPRSKLFITSKVMHN 83


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = +3

Query: 243 KLKKITKEAGEKVAKATA 296
           K KKITKEA +++AK ++
Sbjct: 28  KSKKITKEAAKEIAKQSS 45


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 24.2 bits (50), Expect = 6.5
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 237 ERKLKKITKEAGEKVAKATAPFTTVVQSYGY 329
           +RK  K+ KEA E+V   T     V+Q  G+
Sbjct: 524 QRKEYKLAKEAYERVLAETPNHAKVLQQLGW 554


>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1485

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 15/64 (23%), Positives = 30/64 (46%)
 Frame = +3

Query: 135 HVGRLSHEVGWKYRDVVRKLEDKRKVKAIKLISYERKLKKITKEAGEKVAKATAPFTTVV 314
           HV  +++++     +VV+K   K  VKA ++ +Y +       E     ++     TT V
Sbjct: 371 HVNYVANKIVDAIDEVVKKENKKAPVKAFQIKNYVQVFVNCQIENPSFDSQTKETLTTKV 430

Query: 315 QSYG 326
            ++G
Sbjct: 431 SAFG 434


>SPAC31G5.08 |ups1|ups|uroporphyrinogen-III synthase
           Ups1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 251

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -1

Query: 124 RPGFSQTEYT*CCRYYDTTPVVERWWTT 41
           R GF QT    C R      ++E W+TT
Sbjct: 103 RLGFQQTHGKDCGRGEVLADLIEEWYTT 130


>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 992

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = -2

Query: 147  DVPHDSIYGQASVRQNTRSAAGTTTRRL--LSNGGGQPSYVRS 25
            ++  DSIY  +++    R A+  T RR+  L+   GQ S  +S
Sbjct: 909  EIISDSIYANSTIMDGRRFASEFTRRRIADLTGKDGQQSNNKS 951


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,417,038
Number of Sequences: 5004
Number of extensions: 25426
Number of successful extensions: 100
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)