Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_C15
(370 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0071 - 522920-523063,524125-524212,524289-524677 62 1e-10
03_06_0010 + 30990002-30990273,30990372-30990488,30990581-309906... 60 4e-10
03_06_0007 - 30975910-30975921,30976660-30976747,30976850-309769... 43 9e-05
11_04_0056 + 12942802-12942920,12943022-12943115 38 0.002
07_01_0444 + 3357048-3357425,3357841-3357969,3358165-3358284,335... 31 0.28
05_03_0238 - 10783451-10783735,10784686-10785762 29 0.86
05_05_0082 + 22252993-22255617 29 1.1
09_04_0613 + 18953761-18953932,18954672-18954799,18954885-189549... 27 3.5
02_05_0071 + 25595374-25595422,25595526-25595596,25596531-255965... 27 6.1
12_02_0197 + 15392427-15392617,15392743-15393271 26 8.1
12_02_0033 + 12530311-12531264 26 8.1
08_01_0033 + 244930-245105,245297-245344,245835-246539,246652-24... 26 8.1
01_06_0966 - 33453963-33456692 26 8.1
>07_01_0071 - 522920-523063,524125-524212,524289-524677
Length = 206
Score = 62.1 bits (144), Expect = 1e-10
Identities = 28/51 (54%), Positives = 40/51 (78%)
Frame = +3
Query: 111 LKPGRKYCHVGRLSHEVGWKYRDVVRKLEDKRKVKAIKLISYERKLKKITK 263
L+PG KYC +G+LS EVGW Y D +R+LE+KRK KA ++YER+ K++T+
Sbjct: 134 LQPGHKYCLLGQLSKEVGWNYHDTIRELEEKRKEKA--KVAYERR-KQLTR 181
Score = 28.3 bits (60), Expect = 2.0
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +2
Query: 8 ENALRRLRTYDGCPPPFD 61
E AL L+ +DG PPP+D
Sbjct: 101 EAALANLKAFDGVPPPYD 118
>03_06_0010 +
30990002-30990273,30990372-30990488,30990581-30990668,
30991505-30991648
Length = 206
Score = 60.5 bits (140), Expect = 4e-10
Identities = 29/59 (49%), Positives = 40/59 (67%)
Frame = +3
Query: 111 LKPGRKYCHVGRLSHEVGWKYRDVVRKLEDKRKVKAIKLISYERKLKKITKEAGEKVAK 287
L+PG KYC +G+LS EVGW Y D +R+LE+KRK KA ++L K+ +A EK A+
Sbjct: 134 LQPGHKYCLLGQLSKEVGWNYYDTIRELEEKRKEKAKVAYDRRKQLAKLRVKA-EKAAE 191
Score = 30.3 bits (65), Expect = 0.49
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +2
Query: 8 ENALRRLRTYDGCPPPFD 61
E AL RL+ Y+G PPP+D
Sbjct: 101 EAALARLKAYEGVPPPYD 118
>03_06_0007 -
30975910-30975921,30976660-30976747,30976850-30976966,
30977081-30977154
Length = 96
Score = 42.7 bits (96), Expect = 9e-05
Identities = 16/26 (61%), Positives = 20/26 (76%)
Frame = +3
Query: 111 LKPGRKYCHVGRLSHEVGWKYRDVVR 188
L+PG KYC +G+LS EVGW Y D +R
Sbjct: 68 LQPGHKYCLLGQLSKEVGWNYYDTIR 93
>11_04_0056 + 12942802-12942920,12943022-12943115
Length = 70
Score = 37.9 bits (84), Expect = 0.002
Identities = 14/21 (66%), Positives = 17/21 (80%)
Frame = +3
Query: 111 LKPGRKYCHVGRLSHEVGWKY 173
L+PG KYC +G+LS EVGW Y
Sbjct: 44 LQPGHKYCLLGQLSKEVGWNY 64
Score = 30.3 bits (65), Expect = 0.49
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +2
Query: 8 ENALRRLRTYDGCPPPFD 61
E AL RL+ Y+G PPP+D
Sbjct: 11 EAALARLKAYEGVPPPYD 28
>07_01_0444 +
3357048-3357425,3357841-3357969,3358165-3358284,
3358661-3358753,3358935-3359014,3359180-3359293,
3359530-3359603,3359757-3359833,3360558-3360641,
3360732-3360824,3360901-3361008,3361130-3361204,
3361507-3361911
Length = 609
Score = 31.1 bits (67), Expect = 0.28
Identities = 19/45 (42%), Positives = 29/45 (64%)
Frame = +3
Query: 156 EVGWKYRDVVRKLEDKRKVKAIKLISYERKLKKITKEAGEKVAKA 290
+VG + R RK E+K+KVKA K + + K+ K K+ +K+AKA
Sbjct: 562 KVGPEERKAARK-ENKKKVKAEKREARKDKIPKAEKKKRKKMAKA 605
>05_03_0238 - 10783451-10783735,10784686-10785762
Length = 453
Score = 29.5 bits (63), Expect = 0.86
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +3
Query: 144 RLSHEVGWKYRDVVRKLEDKRKVKAIKLISYERKLKKITKEAGE 275
+L +E+ RD+ ++ EDK IK+ + E K K+ K E
Sbjct: 177 KLGNEIDKTRRDITKQFEDKGNKLEIKMKALEGKTDKLDKSLAE 220
>05_05_0082 + 22252993-22255617
Length = 874
Score = 29.1 bits (62), Expect = 1.1
Identities = 13/17 (76%), Positives = 13/17 (76%)
Frame = +3
Query: 165 WKYRDVVRKLEDKRKVK 215
WK RD VRKL D RKVK
Sbjct: 721 WKERDEVRKLMDYRKVK 737
>09_04_0613 +
18953761-18953932,18954672-18954799,18954885-18954956,
18955033-18955146,18955547-18955615,18955691-18955747,
18956262-18956315,18956387-18956449,18956543-18956605,
18956803-18956967,18957111-18957266,18957315-18957416
Length = 404
Score = 27.5 bits (58), Expect = 3.5
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = +3
Query: 210 VKAIKLIS-YERKLKKITKEAGEKVAKATAPFTTVVQSY 323
VKA K+ Y ++ KK++K ++VAKAT P ++ Y
Sbjct: 308 VKAHKIADPYFQEAKKVSKPYIDQVAKATKPHVEKIRIY 346
>02_05_0071 +
25595374-25595422,25595526-25595596,25596531-25596579,
25597026-25597098,25597175-25597466
Length = 177
Score = 26.6 bits (56), Expect = 6.1
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +2
Query: 251 ENHQGSRREGGESDGAVYNSRPIL 322
++ GSR+E + DGAV +P+L
Sbjct: 126 QSQSGSRKESSQRDGAVSFEKPLL 149
>12_02_0197 + 15392427-15392617,15392743-15393271
Length = 239
Score = 26.2 bits (55), Expect = 8.1
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -2
Query: 129 IYGQASVRQNTRSAAGTTTRRLLSNGGG 46
+YG+ + R +G T R+ LS+GGG
Sbjct: 207 VYGKRRLAGRGRRCSGPTYRQRLSDGGG 234
>12_02_0033 + 12530311-12531264
Length = 317
Score = 26.2 bits (55), Expect = 8.1
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = -2
Query: 45 QPSYVRSLLNAFSSC 1
QP YVRS++N+ S+C
Sbjct: 32 QPHYVRSIVNSLSNC 46
>08_01_0033 + 244930-245105,245297-245344,245835-246539,246652-246796,
246893-247240,247882-248721,248786-248832,249470-249596,
249672-249836,249973-251370,251453-251713,251802-252161
Length = 1539
Score = 26.2 bits (55), Expect = 8.1
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Frame = +3
Query: 156 EVGWKYRDVVRKLEDKRKVKAIKLISYERKLKKITK--EAG-EKVAKATAPFTTVVQSYG 326
++ W Y+D++ ++L ++R+L ++TK AG E+V PF TVV++
Sbjct: 889 DINWSYQDLL-----------LELYLWDRRLDQLTKCVSAGQERVVSCKDPFDTVVKNIR 937
Query: 327 YN 332
N
Sbjct: 938 VN 939
>01_06_0966 - 33453963-33456692
Length = 909
Score = 26.2 bits (55), Expect = 8.1
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +1
Query: 67 ASCRSTCSTTCIL 105
A+CR+ CSTTC L
Sbjct: 839 ANCRALCSTTCFL 851
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,792,200
Number of Sequences: 37544
Number of extensions: 181887
Number of successful extensions: 621
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 576724416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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