Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_C15
(370 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46381-2|CAA86515.1| 202|Caenorhabditis elegans Hypothetical pr... 79 7e-16
U31528-1|AAA74904.1| 202|Caenorhabditis elegans 60S ribosomal p... 79 7e-16
AF038614-7|AAB92060.2| 664|Caenorhabditis elegans Hypothetical ... 31 0.19
Z68337-4|CAA92744.1| 364|Caenorhabditis elegans Hypothetical pr... 29 1.4
AF101318-5|AAC69347.1| 574|Caenorhabditis elegans Hypothetical ... 28 2.4
U28738-2|AAA68309.4| 982|Caenorhabditis elegans Hypothetical pr... 27 3.2
U50184-1|ABJ99064.1| 1540|Caenorhabditis elegans Hypothetical pr... 27 4.2
AC024765-8|AAF60530.1| 165|Caenorhabditis elegans Hypothetical ... 27 5.5
Z81557-12|CAB04532.2| 277|Caenorhabditis elegans Hypothetical p... 26 7.3
AF106582-3|AAC78214.1| 222|Caenorhabditis elegans Hypothetical ... 26 7.3
Z82089-5|CAD91717.1| 4541|Caenorhabditis elegans Hypothetical pr... 26 9.7
Z82089-4|CAB54513.2| 4648|Caenorhabditis elegans Hypothetical pr... 26 9.7
Z82089-2|CAB05003.2| 4530|Caenorhabditis elegans Hypothetical pr... 26 9.7
Z81499-7|CAD91628.1| 4541|Caenorhabditis elegans Hypothetical pr... 26 9.7
Z81499-6|CAB54224.2| 4648|Caenorhabditis elegans Hypothetical pr... 26 9.7
Z81499-4|CAB04090.2| 4530|Caenorhabditis elegans Hypothetical pr... 26 9.7
U00032-5|AAA50636.2| 1009|Caenorhabditis elegans Yeast isw (imit... 26 9.7
AF039053-3|AAC25880.2| 349|Caenorhabditis elegans Hypothetical ... 26 9.7
>Z46381-2|CAA86515.1| 202|Caenorhabditis elegans Hypothetical
protein M01F1.2 protein.
Length = 202
Score = 79.4 bits (187), Expect = 7e-16
Identities = 34/74 (45%), Positives = 50/74 (67%)
Frame = +3
Query: 111 LKPGRKYCHVGRLSHEVGWKYRDVVRKLEDKRKVKAIKLISYERKLKKITKEAGEKVAKA 290
L+P RK+C VGRLSHEVGW+++DVV KLE KRKVK ++K+ K+ +A + A
Sbjct: 129 LQPRRKFCVVGRLSHEVGWQFQDVVAKLEAKRKVKGAAYFEQKKKMDKLAVQAKKNAAPK 188
Query: 291 TAPFTTVVQSYGYN 332
A + ++++ GYN
Sbjct: 189 IAQYQKIIEALGYN 202
>U31528-1|AAA74904.1| 202|Caenorhabditis elegans 60S ribosomal
protein L13A protein.
Length = 202
Score = 79.4 bits (187), Expect = 7e-16
Identities = 34/74 (45%), Positives = 50/74 (67%)
Frame = +3
Query: 111 LKPGRKYCHVGRLSHEVGWKYRDVVRKLEDKRKVKAIKLISYERKLKKITKEAGEKVAKA 290
L+P RK+C VGRLSHEVGW+++DVV KLE KRKVK ++K+ K+ +A + A
Sbjct: 129 LQPRRKFCVVGRLSHEVGWQFQDVVAKLEAKRKVKGAAYFEQKKKMDKLAVQAKKNAAPK 188
Query: 291 TAPFTTVVQSYGYN 332
A + ++++ GYN
Sbjct: 189 IAQYQKIIEALGYN 202
>AF038614-7|AAB92060.2| 664|Caenorhabditis elegans Hypothetical
protein F15E6.9 protein.
Length = 664
Score = 31.5 bits (68), Expect = 0.19
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Frame = +3
Query: 129 YCHVGRLS--HEVGWKYRDVVRKLEDKRKVKAIKL-ISYERKLKKITKEAGEKVAK 287
YC G+ S H + WKYRD V ++ K K+ AI+L + E K I + +KV +
Sbjct: 285 YC-TGKTSILHRIQWKYRDAV-IVQAKEKMSAIELRRAIEAKTNVILHDVEQKVVR 338
>Z68337-4|CAA92744.1| 364|Caenorhabditis elegans Hypothetical
protein M7.7 protein.
Length = 364
Score = 28.7 bits (61), Expect = 1.4
Identities = 15/71 (21%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Frame = +3
Query: 126 KYCHVGRLSHEVGWKYRDV--VRKLEDKRKVKAIKLISYERKLKKITKEAGEKVAKATAP 299
K+ ++ H +GW +RDV D + + + L+ + + K+ K + +AP
Sbjct: 133 KFIEALQMMHSIGWLHRDVKPANVCVDLKSRRHLYLLDFGMSKIYVEKDGTLKARRTSAP 192
Query: 300 FTTVVQSYGYN 332
F ++ N
Sbjct: 193 FRGTLRYVSVN 203
>AF101318-5|AAC69347.1| 574|Caenorhabditis elegans Hypothetical
protein Y73C8C.7 protein.
Length = 574
Score = 27.9 bits (59), Expect = 2.4
Identities = 17/44 (38%), Positives = 26/44 (59%)
Frame = +3
Query: 168 KYRDVVRKLEDKRKVKAIKLISYERKLKKITKEAGEKVAKATAP 299
K +V + E+K K +LI +ER+++ TKEA E+ K AP
Sbjct: 456 KLIEVSQNRENKLIAKR-ELIYFERQIRGYTKEAYEETFKEKAP 498
>U28738-2|AAA68309.4| 982|Caenorhabditis elegans Hypothetical
protein T28D9.7 protein.
Length = 982
Score = 27.5 bits (58), Expect = 3.2
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +2
Query: 200 QEESEGHQADIL*EETQENHQGSRREGGESDGAVYNSRPI 319
+E+ E + D+ EE EN S GGE+ SRPI
Sbjct: 436 EEQEEDDEDDVEQEELDENVSFSTVSGGETFSCEDKSRPI 475
>U50184-1|ABJ99064.1| 1540|Caenorhabditis elegans Hypothetical protein
W03A3.2 protein.
Length = 1540
Score = 27.1 bits (57), Expect = 4.2
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -2
Query: 96 RSAAGTTTRRLLSNGGGQPSYVRSLLNAFSSC 1
R+ AG T LL GG+PS +FS C
Sbjct: 1007 RTDAGNTFIPLLETFGGEPSPASKYFESFSKC 1038
>AC024765-8|AAF60530.1| 165|Caenorhabditis elegans Hypothetical
protein Y39A3CR.8 protein.
Length = 165
Score = 26.6 bits (56), Expect = 5.5
Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Frame = +3
Query: 111 LKPGRKYCHVGRLSHEVGWK---YRDVVRKLEDKRKVKAIKLISYERKLKKITKEAGEKV 281
LK + H+ R S + K Y V K DK+K K IK I + KK+ K EK
Sbjct: 20 LKSKKSIIHLHRFSKNLKNKLPIYFVSVSKGGDKKKKKDIKKIDKDADKKKVVKSV-EKT 78
Query: 282 AK 287
A+
Sbjct: 79 AR 80
>Z81557-12|CAB04532.2| 277|Caenorhabditis elegans Hypothetical
protein F59A1.8 protein.
Length = 277
Score = 26.2 bits (55), Expect = 7.3
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 8/47 (17%)
Frame = -3
Query: 191 FTDNVTVLPSDFVRET-------SHMTVFTARLQSD-RIHVVLQVLR 75
F DNVTV ++ +R+T H ++T + + + R+H + VL+
Sbjct: 205 FLDNVTVSDAEKIRDTIMRSKHFEHCKIYTRKQRDESRVHAIADVLK 251
>AF106582-3|AAC78214.1| 222|Caenorhabditis elegans Hypothetical
protein W05F2.3 protein.
Length = 222
Score = 26.2 bits (55), Expect = 7.3
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -3
Query: 341 LILVVSIGLDDCCKRRRRFRHLLAGFLGD 255
++L+ + CC+RR R H LA F+ D
Sbjct: 165 VVLIAYTVICKCCRRRSRLNH-LAAFVND 192
>Z82089-5|CAD91717.1| 4541|Caenorhabditis elegans Hypothetical protein
ZK270.2e protein.
Length = 4541
Score = 25.8 bits (54), Expect = 9.7
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +3
Query: 186 RKLEDKRKVKAIKLISYERKLKKITKEAGEKVAKAT 293
RK +D++ K IKLI+ +KK T E ++ KAT
Sbjct: 4104 RKRKDQKDQKDIKLIARVLPMKK-TPEKSDRFEKAT 4138
>Z82089-4|CAB54513.2| 4648|Caenorhabditis elegans Hypothetical protein
ZK270.2d protein.
Length = 4648
Score = 25.8 bits (54), Expect = 9.7
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +3
Query: 186 RKLEDKRKVKAIKLISYERKLKKITKEAGEKVAKAT 293
RK +D++ K IKLI+ +KK T E ++ KAT
Sbjct: 4093 RKRKDQKDQKDIKLIARVLPMKK-TPEKSDRFEKAT 4127
>Z82089-2|CAB05003.2| 4530|Caenorhabditis elegans Hypothetical protein
ZK270.2a protein.
Length = 4530
Score = 25.8 bits (54), Expect = 9.7
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +3
Query: 186 RKLEDKRKVKAIKLISYERKLKKITKEAGEKVAKAT 293
RK +D++ K IKLI+ +KK T E ++ KAT
Sbjct: 4093 RKRKDQKDQKDIKLIARVLPMKK-TPEKSDRFEKAT 4127
>Z81499-7|CAD91628.1| 4541|Caenorhabditis elegans Hypothetical protein
ZK270.2e protein.
Length = 4541
Score = 25.8 bits (54), Expect = 9.7
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +3
Query: 186 RKLEDKRKVKAIKLISYERKLKKITKEAGEKVAKAT 293
RK +D++ K IKLI+ +KK T E ++ KAT
Sbjct: 4104 RKRKDQKDQKDIKLIARVLPMKK-TPEKSDRFEKAT 4138
>Z81499-6|CAB54224.2| 4648|Caenorhabditis elegans Hypothetical protein
ZK270.2d protein.
Length = 4648
Score = 25.8 bits (54), Expect = 9.7
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +3
Query: 186 RKLEDKRKVKAIKLISYERKLKKITKEAGEKVAKAT 293
RK +D++ K IKLI+ +KK T E ++ KAT
Sbjct: 4093 RKRKDQKDQKDIKLIARVLPMKK-TPEKSDRFEKAT 4127
>Z81499-4|CAB04090.2| 4530|Caenorhabditis elegans Hypothetical protein
ZK270.2a protein.
Length = 4530
Score = 25.8 bits (54), Expect = 9.7
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +3
Query: 186 RKLEDKRKVKAIKLISYERKLKKITKEAGEKVAKAT 293
RK +D++ K IKLI+ +KK T E ++ KAT
Sbjct: 4093 RKRKDQKDQKDIKLIARVLPMKK-TPEKSDRFEKAT 4127
>U00032-5|AAA50636.2| 1009|Caenorhabditis elegans Yeast isw (imitation
swi) homologprotein 1 protein.
Length = 1009
Score = 25.8 bits (54), Expect = 9.7
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Frame = +3
Query: 183 VRKLEDKRKVKAIKLISYERKLKK---ITKEAGEKVAKATAPFTTVVQSYGYN 332
+ +L+D KV + ++ E ++++ + K K+AK APF + SYG N
Sbjct: 847 IEELQDSEKVLS-QIEKGEARIQRKYAVKKALDAKIAKYKAPFQQLRISYGTN 898
>AF039053-3|AAC25880.2| 349|Caenorhabditis elegans Hypothetical
protein C45H4.13 protein.
Length = 349
Score = 25.8 bits (54), Expect = 9.7
Identities = 18/50 (36%), Positives = 28/50 (56%)
Frame = +3
Query: 165 WKYRDVVRKLEDKRKVKAIKLISYERKLKKITKEAGEKVAKATAPFTTVV 314
WK+R ++RKLE VK KL+S ER+L K+ ++ A T++
Sbjct: 43 WKFRTILRKLE----VKLKKLMS-ERELIMQIKQNPDEPATIIVAIRTLL 87
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,063,581
Number of Sequences: 27780
Number of extensions: 149115
Number of successful extensions: 500
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 500
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 524900642
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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