Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_C14
         (58 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    19   4.2  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        19   4.2  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        19   4.2  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        19   4.2  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    18   9.7  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    18   9.7  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 19.4 bits (38), Expect = 4.2
 Identities = 5/7 (71%), Positives = 6/7 (85%)
 Frame = +1

Query: 16  LHRVWRP 36
           LH +WRP
Sbjct: 84  LHNIWRP 90


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 19.4 bits (38), Expect = 4.2
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = -2

Query: 57  GSTKF*ERPPHAV 19
           GST F ERP  AV
Sbjct: 465 GSTNFNERPAVAV 477


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 19.4 bits (38), Expect = 4.2
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = -2

Query: 57  GSTKF*ERPPHAV 19
           GST F ERP  AV
Sbjct: 465 GSTNFNERPAVAV 477


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 19.4 bits (38), Expect = 4.2
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = -2

Query: 57  GSTKF*ERPPHAV 19
           GST F ERP  AV
Sbjct: 465 GSTNFNERPAVAV 477


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 5/8 (62%), Positives = 7/8 (87%)
 Frame = -3

Query: 29  HTRWSSSF 6
           H RW+S+F
Sbjct: 508 HIRWNSAF 515


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 5/8 (62%), Positives = 7/8 (87%)
 Frame = -3

Query: 29  HTRWSSSF 6
           H RW+S+F
Sbjct: 598 HIRWNSAF 605


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.317    0.136    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,807
Number of Sequences: 438
Number of extensions: 148
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 0
effective length of database: 146,343
effective search space used:  2634174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)