Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_C12
         (312 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar...    38   5e-04
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces...    26   1.1  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    25   2.6  
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su...    25   2.6  
SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6 |Schizosaccharo...    24   4.6  
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo...    23   8.1  

>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
           Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 37.5 bits (83), Expect = 5e-04
 Identities = 16/30 (53%), Positives = 23/30 (76%)
 Frame = +2

Query: 11  TPSNSRQAKDLVSVLQEANQIISPQLQSMA 100
           T  N++QA++LVS+L EA Q I P+L+ MA
Sbjct: 474 TSDNAKQARELVSILSEAKQDIDPKLEEMA 503


>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1154

 Score = 26.2 bits (55), Expect = 1.1
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +1

Query: 115  WRRWMEQKQIWRRT 156
            WRRW+E  + WR++
Sbjct: 1120 WRRWLESDEGWRKS 1133


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
            subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 25.0 bits (52), Expect = 2.6
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -2

Query: 305  TQVLIRGLLLTVKIHTIKFKLDINSHQIF 219
            T  L  GL LT+ I+T+K + +  +  +F
Sbjct: 1254 TSFLESGLALTIPINTVKIRYENGTEDVF 1282


>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
           Sum3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 25.0 bits (52), Expect = 2.6
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +2

Query: 17  SNSRQAKDLVSVLQEANQIISPQLQSMA 100
           +N   AK+L+ +LQEANQ     L +MA
Sbjct: 537 NNKGIAKELIELLQEANQECPSFLIAMA 564


>SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 777

 Score = 24.2 bits (50), Expect = 4.6
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +2

Query: 5   RLTPSNSRQAKDLVSVLQEANQIISPQL 88
           +LTP      +D+V V+QEA ++ + Q+
Sbjct: 496 QLTPIARMYVEDIVKVVQEAEKLYNEQV 523


>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
           Wis4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1401

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 8   LTPSNSRQAKDLVSVLQEANQIISPQL 88
           LTPS+S Q++ L+S     +  ISP +
Sbjct: 70  LTPSHSGQSEKLMSTRTSHSPYISPTM 96


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 887,683
Number of Sequences: 5004
Number of extensions: 10430
Number of successful extensions: 34
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 81889040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)