Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_C12
         (312 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0767 + 27121761-27123335,27123701-27123910,27124843-271249...    31   0.25 
01_01_0509 - 3713109-3713244,3713689-3713733,3713959-3714015,371...    30   0.33 
01_01_0682 - 5244805-5244919,5246468-5246613,5246813-5246994,524...    28   1.3  
07_01_0857 - 7127681-7127830,7128896-7129414                           27   4.1  
09_03_0081 + 12163213-12164088                                         25   9.5  
07_01_0526 - 3913713-3913881,3914505-3914677                           25   9.5  
01_05_0292 + 20518668-20519090,20519213-20519281,20520204-205204...    25   9.5  

>11_06_0767 + 27121761-27123335,27123701-27123910,27124843-27124911,
            27125387-27125656,27126027-27126377,27126480-27126757,
            27126887-27128330
          Length = 1398

 Score = 30.7 bits (66), Expect = 0.25
 Identities = 14/25 (56%), Positives = 18/25 (72%)
 Frame = +2

Query: 26   RQAKDLVSVLQEANQIISPQLQSMA 100
            + A DLV VL+ ANQ + P+LQ MA
Sbjct: 958  KYAGDLVKVLEGANQHVPPELQEMA 982


>01_01_0509 -
           3713109-3713244,3713689-3713733,3713959-3714015,
           3714088-3714438,3714585-3714862,3714939-3715289,
           3715378-3715647,3716035-3716103,3716194-3716304,
           3716503-3716583,3716825-3716914,3717032-3717262
          Length = 689

 Score = 30.3 bits (65), Expect = 0.33
 Identities = 13/26 (50%), Positives = 19/26 (73%)
 Frame = +2

Query: 20  NSRQAKDLVSVLQEANQIISPQLQSM 97
           +S+ A DLV +L+ ANQ +S QL+ M
Sbjct: 532 DSKYASDLVKILEGANQSVSQQLRDM 557


>01_01_0682 -
           5244805-5244919,5246468-5246613,5246813-5246994,
           5247069-5247295,5247382-5247467,5247564-5247656,
           5247964-5248118,5248407-5248490,5248589-5248768,
           5249587-5249828,5249927-5249982
          Length = 521

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 11/20 (55%), Positives = 17/20 (85%)
 Frame = +2

Query: 11  TPSNSRQAKDLVSVLQEANQ 70
           T +N+R AKDL+++L+EA Q
Sbjct: 415 TAANARFAKDLINILEEAGQ 434


>07_01_0857 - 7127681-7127830,7128896-7129414
          Length = 222

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 4/33 (12%)
 Frame = +1

Query: 79  PSVAING*PQR---RWRRWMEQKQIW-RRTWRW 165
           P VA++  P+R   RWRR   + Q W RR WR+
Sbjct: 99  PGVAVHLRPRRWDWRWRRCHWRPQRWRRRRWRF 131


>09_03_0081 + 12163213-12164088
          Length = 291

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = +1

Query: 76  KPSVAING*PQRRWRRWMEQKQIWRRTWRWWI 171
           +P     G  QR W +W+ + ++ R   R W+
Sbjct: 106 RPQKLYRGVRQRHWGKWVAEIRLPRNRTRLWL 137


>07_01_0526 - 3913713-3913881,3914505-3914677
          Length = 113

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -3

Query: 52 NGDEIFSLAGVGWGKPV 2
          NGD + SLAG GW   V
Sbjct: 37 NGDGVLSLAGEGWDDAV 53


>01_05_0292 +
           20518668-20519090,20519213-20519281,20520204-20520473,
           20520734-20521084,20521251-20521528,20522755-20523099,
           20523346-20523911,20525155-20525528
          Length = 891

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 20  NSRQAKDLVSVLQEANQIISPQLQSMA 100
           +S+ A DL+ +L+ ANQ +   L  MA
Sbjct: 502 DSKYAADLIKILEGANQRVPRDLADMA 528


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,932,276
Number of Sequences: 37544
Number of extensions: 74145
Number of successful extensions: 258
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 251
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 256
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 388087168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)