Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_C12
         (312 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z97056-3|CAB09792.1|  650|Homo sapiens DEAD (Asp-Glu-Ala-Asp) bo...    41   7e-04
U59321-1|AAC50787.1|  650|Homo sapiens DEAD-box protein p72 prot...    41   7e-04
CR456432-1|CAG30318.1|  652|Homo sapiens DDX17 protein.                41   7e-04
BC000595-1|AAH00595.2|  729|Homo sapiens DEAD (Asp-Glu-Ala-Asp) ...    41   7e-04
AB209595-1|BAD92832.1|  737|Homo sapiens DEAD box polypeptide 17...    41   7e-04
X52104-1|CAA36324.1|  614|Homo sapiens protein ( Human mRNA for ...    40   0.002
X15729-1|CAA33751.1|  614|Homo sapiens protein ( Human mRNA for ...    40   0.002
BT006943-1|AAP35589.1|  614|Homo sapiens DEAD/H (Asp-Glu-Ala-Asp...    40   0.002
BC016027-1|AAH16027.1|  614|Homo sapiens DEAD (Asp-Glu-Ala-Asp) ...    40   0.002
AF015812-1|AAB84094.1|  614|Homo sapiens RNA helicase p68 protein.     40   0.002
BC066938-1|AAH66938.1|  648|Homo sapiens DEAD (Asp-Glu-Ala-Asp) ...    31   0.95 
AJ278110-1|CAB92442.1|  648|Homo sapiens DEAD-box protein protein.     31   0.95 
AK131291-1|BAD18462.1|  221|Homo sapiens protein ( Homo sapiens ...    29   2.2  
BC093081-1|AAH93081.1|  938|Homo sapiens DEAD (Asp-Glu-Ala-Asp) ...    29   2.9  
BC078667-1|AAH78667.1|  919|Homo sapiens DDX42 protein protein.        29   2.9  
BC015505-1|AAH15505.1|  819|Homo sapiens DDX42 protein protein.        29   2.9  
AF083255-1|AAC32396.1|  709|Homo sapiens RNA helicase-related pr...    29   2.9  
AB036090-1|BAC66466.1|  938|Homo sapiens RNA helicase-related pr...    29   2.9  

>Z97056-3|CAB09792.1|  650|Homo sapiens DEAD (Asp-Glu-Ala-Asp) box
           polypeptide 17 protein.
          Length = 650

 Score = 41.1 bits (92), Expect = 7e-04
 Identities = 16/31 (51%), Positives = 24/31 (77%)
 Frame = +2

Query: 11  TPSNSRQAKDLVSVLQEANQIISPQLQSMAD 103
           TP N +QA++L+ VL+EANQ I+P+L  + D
Sbjct: 444 TPGNLKQARELIKVLEEANQAINPKLMQLVD 474


>U59321-1|AAC50787.1|  650|Homo sapiens DEAD-box protein p72
           protein.
          Length = 650

 Score = 41.1 bits (92), Expect = 7e-04
 Identities = 16/31 (51%), Positives = 24/31 (77%)
 Frame = +2

Query: 11  TPSNSRQAKDLVSVLQEANQIISPQLQSMAD 103
           TP N +QA++L+ VL+EANQ I+P+L  + D
Sbjct: 444 TPGNLKQARELIKVLEEANQAINPKLMQLVD 474


>CR456432-1|CAG30318.1|  652|Homo sapiens DDX17 protein.
          Length = 652

 Score = 41.1 bits (92), Expect = 7e-04
 Identities = 16/31 (51%), Positives = 24/31 (77%)
 Frame = +2

Query: 11  TPSNSRQAKDLVSVLQEANQIISPQLQSMAD 103
           TP N +QA++L+ VL+EANQ I+P+L  + D
Sbjct: 444 TPGNLKQARELIKVLEEANQAINPKLMQLVD 474


>BC000595-1|AAH00595.2|  729|Homo sapiens DEAD (Asp-Glu-Ala-Asp) box
           polypeptide 17 protein.
          Length = 729

 Score = 41.1 bits (92), Expect = 7e-04
 Identities = 16/31 (51%), Positives = 24/31 (77%)
 Frame = +2

Query: 11  TPSNSRQAKDLVSVLQEANQIISPQLQSMAD 103
           TP N +QA++L+ VL+EANQ I+P+L  + D
Sbjct: 523 TPGNLKQARELIKVLEEANQAINPKLMQLVD 553


>AB209595-1|BAD92832.1|  737|Homo sapiens DEAD box polypeptide 17
           isoform p82 variant protein.
          Length = 737

 Score = 41.1 bits (92), Expect = 7e-04
 Identities = 16/31 (51%), Positives = 24/31 (77%)
 Frame = +2

Query: 11  TPSNSRQAKDLVSVLQEANQIISPQLQSMAD 103
           TP N +QA++L+ VL+EANQ I+P+L  + D
Sbjct: 525 TPGNLKQARELIKVLEEANQAINPKLMQLVD 555


>X52104-1|CAA36324.1|  614|Homo sapiens protein ( Human mRNA for p68
           protein. ).
          Length = 614

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 16/31 (51%), Positives = 24/31 (77%)
 Frame = +2

Query: 11  TPSNSRQAKDLVSVLQEANQIISPQLQSMAD 103
           TP+N +Q  DL+SVL+EANQ I+P+L  + +
Sbjct: 446 TPNNIKQVSDLISVLREANQAINPKLLQLVE 476


>X15729-1|CAA33751.1|  614|Homo sapiens protein ( Human mRNA for
           nuclear p68 protein. ).
          Length = 614

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 16/31 (51%), Positives = 24/31 (77%)
 Frame = +2

Query: 11  TPSNSRQAKDLVSVLQEANQIISPQLQSMAD 103
           TP+N +Q  DL+SVL+EANQ I+P+L  + +
Sbjct: 446 TPNNIKQVSDLISVLREANQAINPKLLQLVE 476


>BT006943-1|AAP35589.1|  614|Homo sapiens DEAD/H
           (Asp-Glu-Ala-Asp/His) box polypeptide 5 (RNA helicase,
           68kDa) protein.
          Length = 614

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 16/31 (51%), Positives = 24/31 (77%)
 Frame = +2

Query: 11  TPSNSRQAKDLVSVLQEANQIISPQLQSMAD 103
           TP+N +Q  DL+SVL+EANQ I+P+L  + +
Sbjct: 446 TPNNIKQVSDLISVLREANQAINPKLLQLVE 476


>BC016027-1|AAH16027.1|  614|Homo sapiens DEAD (Asp-Glu-Ala-Asp) box
           polypeptide 5 protein.
          Length = 614

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 16/31 (51%), Positives = 24/31 (77%)
 Frame = +2

Query: 11  TPSNSRQAKDLVSVLQEANQIISPQLQSMAD 103
           TP+N +Q  DL+SVL+EANQ I+P+L  + +
Sbjct: 446 TPNNIKQVSDLISVLREANQAINPKLLQLVE 476


>AF015812-1|AAB84094.1|  614|Homo sapiens RNA helicase p68 protein.
          Length = 614

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 16/31 (51%), Positives = 24/31 (77%)
 Frame = +2

Query: 11  TPSNSRQAKDLVSVLQEANQIISPQLQSMAD 103
           TP+N +Q  DL+SVL+EANQ I+P+L  + +
Sbjct: 446 TPNNIKQVSDLISVLREANQAINPKLLQLVE 476


>BC066938-1|AAH66938.1|  648|Homo sapiens DEAD (Asp-Glu-Ala-Asp) box
           polypeptide 43 protein.
          Length = 648

 Score = 30.7 bits (66), Expect = 0.95
 Identities = 14/32 (43%), Positives = 23/32 (71%)
 Frame = +2

Query: 8   LTPSNSRQAKDLVSVLQEANQIISPQLQSMAD 103
           LT ++ R A +L+++L+ ANQ I  +L SMA+
Sbjct: 591 LTRNDWRVASELINILERANQSIPEELVSMAE 622


>AJ278110-1|CAB92442.1|  648|Homo sapiens DEAD-box protein protein.
          Length = 648

 Score = 30.7 bits (66), Expect = 0.95
 Identities = 14/32 (43%), Positives = 23/32 (71%)
 Frame = +2

Query: 8   LTPSNSRQAKDLVSVLQEANQIISPQLQSMAD 103
           LT ++ R A +L+++L+ ANQ I  +L SMA+
Sbjct: 591 LTRNDWRVASELINILERANQSIPEELVSMAE 622


>AK131291-1|BAD18462.1|  221|Homo sapiens protein ( Homo sapiens
           cDNA FLJ16245 fis, clone HCHON2000743. ).
          Length = 221

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 14/20 (70%), Positives = 17/20 (85%), Gaps = 1/20 (5%)
 Frame = -1

Query: 57  CKTETR-SLAWRELDGVSLC 1
           CKTET+ S A++E DGVSLC
Sbjct: 171 CKTETQESQAFQERDGVSLC 190


>BC093081-1|AAH93081.1|  938|Homo sapiens DEAD (Asp-Glu-Ala-Asp) box
           polypeptide 42 protein.
          Length = 938

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = +2

Query: 8   LTPSNSRQAKDLVSVLQEANQIISPQLQSMA 100
           LTP +S  A DLV  L+ ANQ +S +L  +A
Sbjct: 602 LTPKDSNFAGDLVRNLEGANQHVSKELLDLA 632


>BC078667-1|AAH78667.1|  919|Homo sapiens DDX42 protein protein.
          Length = 919

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = +2

Query: 8   LTPSNSRQAKDLVSVLQEANQIISPQLQSMA 100
           LTP +S  A DLV  L+ ANQ +S +L  +A
Sbjct: 583 LTPKDSNFAGDLVRNLEGANQHVSKELLDLA 613


>BC015505-1|AAH15505.1|  819|Homo sapiens DDX42 protein protein.
          Length = 819

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = +2

Query: 8   LTPSNSRQAKDLVSVLQEANQIISPQLQSMA 100
           LTP +S  A DLV  L+ ANQ +S +L  +A
Sbjct: 483 LTPKDSNFAGDLVRNLEGANQHVSKELLDLA 513


>AF083255-1|AAC32396.1|  709|Homo sapiens RNA helicase-related
           protein protein.
          Length = 709

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = +2

Query: 8   LTPSNSRQAKDLVSVLQEANQIISPQLQSMA 100
           LTP +S  A DLV  L+ ANQ +S +L  +A
Sbjct: 483 LTPKDSNFAGDLVRNLEGANQHVSKELLDLA 513


>AB036090-1|BAC66466.1|  938|Homo sapiens RNA helicase-related
           protein protein.
          Length = 938

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = +2

Query: 8   LTPSNSRQAKDLVSVLQEANQIISPQLQSMA 100
           LTP +S  A DLV  L+ ANQ +S +L  +A
Sbjct: 602 LTPKDSNFAGDLVRNLEGANQHVSKELLDLA 632


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,833,525
Number of Sequences: 237096
Number of extensions: 396780
Number of successful extensions: 802
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 76,859,062
effective HSP length: 78
effective length of database: 58,365,574
effective search space used: 1459139350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)