Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_C12
         (312 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    20   6.0  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       20   8.0  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                20   8.0  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 20.2 bits (40), Expect = 6.0
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +3

Query: 12  PHPTPAKLKISSPFYKKLIR**ALSCNQWLTAAEVE 119
           P P+P  L ++ P  + LI      C   L + E+E
Sbjct: 445 PVPSPDPLDLAIPVRETLILPPRKRCKMILESMEIE 480


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 19.8 bits (39), Expect = 8.0
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +2

Query: 38  DLVSVLQEANQII 76
           DLV +L++ANQ +
Sbjct: 566 DLVRILKQANQSV 578


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 19.8 bits (39), Expect = 8.0
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -1

Query: 303 TSTHTRIAPNC*DSYYKI 250
           TST T + P+C    Y I
Sbjct: 91  TSTTTSVTPSCRRQRYNI 108


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 59,273
Number of Sequences: 438
Number of extensions: 664
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6595479
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)