Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_C11
(461 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|ch... 27 1.8
SPAC20H4.07 |rhp57||RecA family ATPase Rhp57|Schizosaccharomyces... 25 5.6
SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces p... 25 7.4
SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces po... 25 7.4
SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy... 24 9.8
SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase |Schizos... 24 9.8
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr... 24 9.8
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M... 24 9.8
SPAC3G9.13c |msw1||mitochondrial tryptophan-tRNA ligase Msw1 |Sc... 24 9.8
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 24 9.8
>SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 500
Score = 26.6 bits (56), Expect = 1.8
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Frame = -2
Query: 265 YVIVFRPFPASSTFFISNEFLF--VYRINLIFVYIVNLLFN 149
Y + FRP SS I L+ YR N I++ ++ + N
Sbjct: 154 YTLYFRPMVVSSFAHIFGHLLYCMAYRANWIYLILIGRMLN 194
>SPAC20H4.07 |rhp57||RecA family ATPase Rhp57|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 25.0 bits (52), Expect = 5.6
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -2
Query: 451 LTPIRFRASRVRSKYIST 398
L P+R AS+V SKY++T
Sbjct: 60 LQPVRCSASKVTSKYLTT 77
>SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 521
Score = 24.6 bits (51), Expect = 7.4
Identities = 13/38 (34%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
Frame = +2
Query: 98 DIDNLEEANNVN---EKFGNIEQKVNDINKYQVNTINK 202
DID + ++N + E FGN K+N +N + V+T+++
Sbjct: 34 DIDWNQASSNYSARQENFGNNSSKINSVNDH-VSTLSR 70
>SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 639
Score = 24.6 bits (51), Expect = 7.4
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +3
Query: 252 NTMTYFRKWMKTT*ECSRMSQIQAEISLLVL 344
N + YF W+++T E ++M + ++ S VL
Sbjct: 228 NVIRYFSSWVESTTEATQMPIVMSKNSSRVL 258
>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 922
Score = 24.2 bits (50), Expect = 9.8
Identities = 16/57 (28%), Positives = 27/57 (47%)
Frame = +3
Query: 285 TT*ECSRMSQIQAEISLLVLAITLDA*VITENLPIVVLVLIYLDRTRLALNLIGVRL 455
TT + + QI +L + I+ D + +L + + YLD + LNL G +L
Sbjct: 521 TTLKLEQTRQIDFTDDVLAVKISPDGRFVAASLLDNTVKVYYLDSLKFFLNLYGHKL 577
>SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 891
Score = 24.2 bits (50), Expect = 9.8
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +2
Query: 95 VDIDNLEEANNVNEKFGNIEQKVNDINKYQVNTI 196
V D ++ + EK EQ + D +YQ NTI
Sbjct: 421 VGCDKMDPIRGIREKLLAFEQFLYDNPEYQKNTI 454
>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 24.2 bits (50), Expect = 9.8
Identities = 13/58 (22%), Positives = 27/58 (46%)
Frame = +2
Query: 98 DIDNLEEANNVNEKFGNIEQKVNDINKYQVNTINKEKFVTDXXXXXXXXXXKYDDIFS 271
D ++L+E + V + IEQ +D++ ++ I E + D + ++FS
Sbjct: 120 DSEDLDEESVVKDTEEIIEQAQHDVSLRNLSGIEDENIIDDGETAINEQKKREANVFS 177
>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1052
Score = 24.2 bits (50), Expect = 9.8
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = -2
Query: 334 REISA*IWLIREHSQVVFIHFRKYVI 257
RE+S+ IWLI ++H K+++
Sbjct: 150 RELSSKIWLIERKLAEFYMHLLKHMV 175
>SPAC3G9.13c |msw1||mitochondrial tryptophan-tRNA ligase Msw1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 361
Score = 24.2 bits (50), Expect = 9.8
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +2
Query: 278 DEDDLRMLSDEPDSSRDFSIGFGYYP 355
D DDL L SS F++G YP
Sbjct: 134 DHDDLSFLDASATSSTRFNLGLFSYP 159
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 24.2 bits (50), Expect = 9.8
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +2
Query: 92 LVDIDNLEEANNVNEKFGNIEQKVNDINKYQVNTINK 202
L D+ + + +NV F N+EQ ++ N Y++ NK
Sbjct: 88 LYDVTDKKSFDNVRTWFSNVEQHASE-NVYKILIGNK 123
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,685,162
Number of Sequences: 5004
Number of extensions: 33790
Number of successful extensions: 101
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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