Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_C11
(461 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_05_0014 + 18392622-18392834,18393064-18393147,18393709-183937... 35 0.028
02_02_0670 + 12787817-12787876,12788129-12788388,12788869-127892... 30 0.79
07_01_0251 + 1874148-1874311,1874367-1874429,1874484-1874709,187... 30 1.0
08_01_0143 - 1125211-1126414,1129217-1129368 29 2.4
01_02_0078 - 10894871-10895841,10897268-10898426 28 4.2
10_07_0044 + 12319382-12319532,12319978-12320163,12320247-123203... 27 5.6
04_04_0468 - 25447774-25447945,25449016-25449130,25449541-254498... 27 5.6
02_05_0161 + 26384079-26384086,26386173-26386226,26386376-263864... 27 5.6
01_01_0565 - 4159946-4160042,4160140-4160243,4160378-4160533,416... 27 5.6
05_06_0228 + 26570066-26571352 27 7.3
01_05_0340 - 21139885-21139978,21140169-21140272,21140379-211405... 27 7.3
01_01_0104 + 780442-781273,782514-783424 27 9.7
>11_05_0014 +
18392622-18392834,18393064-18393147,18393709-18393797,
18393889-18394063,18394370-18394489,18394591-18394677,
18394755-18394826,18395166-18395279,18395387-18395487,
18395576-18395669,18395794-18395961,18396287-18396352,
18396475-18396531,18396708-18396927,18397015-18397151,
18397573-18397641,18397722-18397781,18397927-18397998,
18398171-18398218,18398376-18398495,18398743-18398808,
18399341-18399453,18399821-18399905,18400246-18400356,
18400436-18400531,18401075-18401143,18401235-18401453
Length = 974
Score = 35.1 bits (77), Expect = 0.028
Identities = 17/36 (47%), Positives = 23/36 (63%)
Frame = +2
Query: 326 DFSIGFGYYPGCVGDNREPANRSSGAYIFRPNSTSP 433
+F + YY G G+ +P ++SGAYIFRPN T P
Sbjct: 603 NFEQKYKYYIGQDGNGSDP--QASGAYIFRPNGTVP 636
>02_02_0670 +
12787817-12787876,12788129-12788388,12788869-12789205,
12789457-12789549
Length = 249
Score = 30.3 bits (65), Expect = 0.79
Identities = 19/66 (28%), Positives = 30/66 (45%)
Frame = -1
Query: 449 DSYKVQG*SSSV*IYKHQNYDWQVLCYHLRIQGNSQNQ*RNLCLNLAHPRAFSGRLHPFS 270
+ ++ +G + K Q DW Y L+++ + RNL L HP +F LH F
Sbjct: 59 EQFRAEGYGNDKVRSKDQILDWSDWIY-LKVEPEDE---RNLALWPKHPSSFRDALHEFV 114
Query: 269 KICHRI 252
C R+
Sbjct: 115 VRCRRV 120
>07_01_0251 +
1874148-1874311,1874367-1874429,1874484-1874709,
1874830-1875081,1875158-1875267,1875720-1875815,
1875898-1875985,1876246-1876475,1876745-1876929,
1877136-1877335,1877592-1877924,1878058-1878159,
1878869-1879166,1879626-1879774,1879859-1880143,
1880531-1880728
Length = 992
Score = 29.9 bits (64), Expect = 1.0
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = -2
Query: 274 FRKYVIVFRPFPASSTFFISNEFLFVYRINLIFVYIVNLLFNI 146
F +V+VF FP +F I E + R+N F + N++F I
Sbjct: 671 FVYFVLVFSMFPQCDSFRILREDSWADRVNSFFTAMWNVVFEI 713
>08_01_0143 - 1125211-1126414,1129217-1129368
Length = 451
Score = 28.7 bits (61), Expect = 2.4
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = -1
Query: 122 SLLPNYLCLLNQNLESLSNIHWYYNNIHYFLY 27
SL P ++CLL +LE+ W + IH FLY
Sbjct: 389 SLPPQHVCLL-AHLEAYQRKRWMWIPIHKFLY 419
>01_02_0078 - 10894871-10895841,10897268-10898426
Length = 709
Score = 27.9 bits (59), Expect = 4.2
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +2
Query: 200 KEKFVT-DXXXXXXXXXXKYDDIFSKMDEDDLRMLSDEPDSSRDFSIGFGYYPG 358
K+KF T + ++ +S++DE D RML SR + G G YPG
Sbjct: 302 KKKFNTGEEDEPSQNRSAHFEYYWSELDELDGRMLFVGLGCSRSYKAGDGRYPG 355
>10_07_0044 +
12319382-12319532,12319978-12320163,12320247-12320396,
12320495-12320644,12320728-12321417,12321641-12322033,
12322073-12322546,12322634-12323974,12324042-12324388
Length = 1293
Score = 27.5 bits (58), Expect = 5.6
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +2
Query: 314 DSSRDFSIGFGYYPGCVGDNREPANRSSGAYIFRPNSTSPE 436
D+ R F+ F + V ++ AN SSG Y FR + + PE
Sbjct: 538 DNIRYFNGHFSFTTLGVSLDKAFANMSSGVYTFRAHESGPE 578
>04_04_0468 -
25447774-25447945,25449016-25449130,25449541-25449877,
25450299-25450628,25451090-25451362,25451471-25451929,
25452307-25452516,25452617-25452828,25453304-25453404,
25453584-25454008,25454167-25454360,25454436-25454701,
25454809-25455015,25455121-25455281,25455741-25455933,
25456158-25456251,25457238-25457373,25458074-25458202,
25458315-25458449,25458549-25458613,25459875-25459950,
25460775-25460885,25461194-25461371,25462340-25462434
Length = 1557
Score = 27.5 bits (58), Expect = 5.6
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -1
Query: 128 HYSLLPNYLCLLNQNLESLSNIHWYY 51
H L+P L L+SLSN+H+YY
Sbjct: 624 HEMLIPAVLKPSGLKLDSLSNLHFYY 649
>02_05_0161 +
26384079-26384086,26386173-26386226,26386376-26386448,
26386775-26386822,26386906-26386953,26387990-26388061,
26388156-26388311,26388428-26388531,26388628-26388724
Length = 219
Score = 27.5 bits (58), Expect = 5.6
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = +2
Query: 134 EKFGNIEQKVNDINKYQVNTINK 202
E F N++Q +N+I++Y + +NK
Sbjct: 110 ESFNNVKQWLNEIDRYASDNVNK 132
>01_01_0565 -
4159946-4160042,4160140-4160243,4160378-4160533,
4160629-4160700,4161796-4161843,4161923-4161970,
4162295-4162367,4163188-4163201
Length = 203
Score = 27.5 bits (58), Expect = 5.6
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = +2
Query: 134 EKFGNIEQKVNDINKYQVNTINK 202
E F N++Q +N+I++Y + +NK
Sbjct: 94 ESFNNVKQWLNEIDRYASDNVNK 116
>05_06_0228 + 26570066-26571352
Length = 428
Score = 27.1 bits (57), Expect = 7.3
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Frame = +2
Query: 200 KEKFVT-DXXXXXXXXXXKYDDIFSKMDEDDL--RMLSDEPDSSRDFSIGFGYYPG 358
KEKF T + ++ +S++D D+L RML SR + G G YPG
Sbjct: 308 KEKFNTVEEDEPSQNRSAHFEYYWSELDLDELDGRMLFVGRGCSRSYEAGDGRYPG 363
>01_05_0340 -
21139885-21139978,21140169-21140272,21140379-21140534,
21140622-21140693,21140782-21140829,21140923-21140970,
21141807-21141879,21142333-21142346
Length = 202
Score = 27.1 bits (57), Expect = 7.3
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +2
Query: 134 EKFGNIEQKVNDINKYQVNTINK 202
E F N++Q +N+I++Y +NK
Sbjct: 94 ESFNNVKQWLNEIDRYASENVNK 116
>01_01_0104 + 780442-781273,782514-783424
Length = 580
Score = 26.6 bits (56), Expect = 9.7
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +2
Query: 350 YPGCVGDNREPANRSSGAYIFRPNSTSPEPY 442
Y GC R PA S + F P+ TSP PY
Sbjct: 127 YHGCNLYRRIPAKIVSCSKEFTPSGTSPVPY 157
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,855,692
Number of Sequences: 37544
Number of extensions: 182659
Number of successful extensions: 444
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 444
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 919380308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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