Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_C11
         (461 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025726-9|AAK73924.1|  594|Caenorhabditis elegans Hypothetical ...    31   0.40 
AC025726-8|AAT81183.1|  537|Caenorhabditis elegans Hypothetical ...    31   0.40 
AF077542-8|AAC26300.2|  342|Caenorhabditis elegans Serpentine re...    29   1.6  
Z75525-7|CAH10769.1|  573|Caenorhabditis elegans Hypothetical pr...    29   2.1  
Z75525-6|CAA99765.2|  623|Caenorhabditis elegans Hypothetical pr...    29   2.1  
AF003925-1|AAB61344.1|  573|Caenorhabditis elegans mRNA capping ...    29   2.1  
U40948-5|AAA81731.2|  955|Caenorhabditis elegans Hypothetical pr...    27   4.9  
U13072-2|AAK31397.2|  380|Caenorhabditis elegans Hypothetical pr...    27   6.5  

>AC025726-9|AAK73924.1|  594|Caenorhabditis elegans Hypothetical
           protein Y71G12B.23a protein.
          Length = 594

 Score = 31.1 bits (67), Expect = 0.40
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +2

Query: 254 YDDIFSKMDEDDLRMLSDEPDSS 322
           YDD F + DEDDL  LS +P  S
Sbjct: 153 YDDDFEQEDEDDLEWLSSQPGGS 175


>AC025726-8|AAT81183.1|  537|Caenorhabditis elegans Hypothetical
           protein Y71G12B.23b protein.
          Length = 537

 Score = 31.1 bits (67), Expect = 0.40
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +2

Query: 254 YDDIFSKMDEDDLRMLSDEPDSS 322
           YDD F + DEDDL  LS +P  S
Sbjct: 153 YDDDFEQEDEDDLEWLSSQPGGS 175


>AF077542-8|AAC26300.2|  342|Caenorhabditis elegans Serpentine
           receptor, class z protein64 protein.
          Length = 342

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 13/31 (41%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
 Frame = -3

Query: 207 FSLFIVLT*YLF-ISLTFCSILPNFSLTLFA 118
           F+LF+V+  Y+F IS    ++LPN S T+++
Sbjct: 77  FTLFVVVAKYIFFISFQVFAVLPNMSETIYS 107


>Z75525-7|CAH10769.1|  573|Caenorhabditis elegans Hypothetical
           protein C03D6.3b protein.
          Length = 573

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
 Frame = +2

Query: 257 DDIFSKMD--EDDLRMLSDEPDSSRDFSIG 340
           DD+F++ D  EDD  +  ++PD  R+ SIG
Sbjct: 169 DDLFARYDPTEDDKILAPEKPDWEREMSIG 198


>Z75525-6|CAA99765.2|  623|Caenorhabditis elegans Hypothetical
           protein C03D6.3a protein.
          Length = 623

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
 Frame = +2

Query: 257 DDIFSKMD--EDDLRMLSDEPDSSRDFSIG 340
           DD+F++ D  EDD  +  ++PD  R+ SIG
Sbjct: 181 DDLFARYDPTEDDKILAPEKPDWEREMSIG 210


>AF003925-1|AAB61344.1|  573|Caenorhabditis elegans mRNA capping
           enzyme protein.
          Length = 573

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
 Frame = +2

Query: 257 DDIFSKMD--EDDLRMLSDEPDSSRDFSIG 340
           DD+F++ D  EDD  +  ++PD  R+ SIG
Sbjct: 169 DDLFARYDPTEDDKILAPEKPDWEREMSIG 198


>U40948-5|AAA81731.2|  955|Caenorhabditis elegans Hypothetical
           protein F55D10.1 protein.
          Length = 955

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +2

Query: 341 FGYYPGCVGDNREPANRSSGAYIFRPNSTSP 433
           F YY G    + +P    SGAYIFRP +  P
Sbjct: 608 FFYYEGIDSKDDQP----SGAYIFRPKTQQP 634


>U13072-2|AAK31397.2|  380|Caenorhabditis elegans Hypothetical
           protein C07D10.5 protein.
          Length = 380

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -1

Query: 128 HYSLLPNYLCLLNQNLESLSNIHWYYNNIHYFLYLF*WYH 9
           HY LLP+    L + + SLS    Y  N+   L+LF  Y+
Sbjct: 250 HYGLLPSNSNSLEEKMASLSVTKKYSINLGTLLFLFLDYY 289


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,965,198
Number of Sequences: 27780
Number of extensions: 182317
Number of successful extensions: 589
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 589
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 818426686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)