Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_C10
(561 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 203 2e-53
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 124 1e-29
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 116 3e-27
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 102 4e-23
SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomy... 29 0.35
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc... 28 1.1
SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c... 27 1.9
SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomy... 27 2.5
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII... 26 3.3
SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr 3|||Ma... 26 3.3
SPAC11D3.10 |||nifs homolog|Schizosaccharomyces pombe|chr 1|||Ma... 26 4.4
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar... 25 5.8
SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces po... 25 7.6
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 203 bits (495), Expect = 2e-53
Identities = 96/164 (58%), Positives = 115/164 (70%)
Frame = +1
Query: 70 PDNFVFGQSGAGNNWAKGHYTEVC*ASRFRLRRSSQGSKSCDCLQGFQXXXXXXXXXXXX 249
PDN ++GQSGAGN WAKGHYTE + L + +++CD LQGFQ
Sbjct: 87 PDNIIYGQSGAGNIWAKGHYTEGAELADAVLDVVRREAEACDALQGFQLTHSLGGGTGSG 146
Query: 250 XXXXXXXKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEA 429
KIREEYPDR+M T+SV P+PK SDTVVEPYNATLS+HQLVEN+DET+CIDNEA
Sbjct: 147 MGTLLLSKIREEYPDRMMATFSVAPAPKSSDTVVEPYNATLSMHQLVENSDETFCIDNEA 206
Query: 430 LYDICFRTLKLSTPTYGDLNHLVSLTMSGVTTCLRFPGQLTADL 561
L I TLK+ +P+Y DLNHLVS M+GVTT RFPG+L +DL
Sbjct: 207 LSSIFANTLKIKSPSYDDLNHLVSAVMAGVTTSFRFPGELNSDL 250
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 124 bits (298), Expect = 1e-29
Identities = 62/164 (37%), Positives = 89/164 (54%)
Frame = +1
Query: 70 PDNFVFGQSGAGNNWAKGHYTEVC*ASRFRLRRSSQGSKSCDCLQGFQXXXXXXXXXXXX 249
P+ V G+ A NN+A+GHYT L R + + +C LQGF
Sbjct: 93 PEQMVTGKEDASNNYARGHYTVGKEMIDSVLERIRRMADNCSGLQGFLVFHSFGGGTGSG 152
Query: 250 XXXXXXXKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEA 429
++ EY + +SV P+P+VS +VVEPYN+ L+ H ++N+D T+ +DNEA
Sbjct: 153 LGALLLERLNMEYGKKSNLQFSVYPAPQVSTSVVEPYNSVLTTHATLDNSDCTFMVDNEA 212
Query: 430 LYDICFRTLKLSTPTYGDLNHLVSLTMSGVTTCLRFPGQLTADL 561
YDIC R L + PTY +LN L++ +S +T LRF G L DL
Sbjct: 213 CYDICRRNLDIERPTYENLNRLIAQVVSSITASLRFAGSLNVDL 256
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 116 bits (278), Expect = 3e-27
Identities = 62/172 (36%), Positives = 93/172 (54%), Gaps = 4/172 (2%)
Frame = +1
Query: 58 RDL-PPDNFVFGQSGAGNNWAKGHYT---EVC*ASRFRLRRSSQGSKSCDCLQGFQXXXX 225
RDL P+ + G+ A NN+A+GHYT E+ ++RR + +C LQGF
Sbjct: 84 RDLFHPEQLITGKEDASNNYARGHYTVGKELVDEVTDKIRRIAD---NCSGLQGFLVFHS 140
Query: 226 XXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDE 405
++ EY + +SV P+P+VS +VVEPYN+ L+ H ++ D
Sbjct: 141 FGGGTGSGFGALLLERLAMEYTKKSKLQFSVYPAPQVSTSVVEPYNSVLTTHATLDLADC 200
Query: 406 TYCIDNEALYDICFRTLKLSTPTYGDLNHLVSLTMSGVTTCLRFPGQLTADL 561
T+ +DNE+ YDIC R L + P+Y +LN L++ +S +T LRF G L DL
Sbjct: 201 TFMVDNESCYDICRRNLDIERPSYENLNRLIAQVVSSITASLRFEGSLNVDL 252
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 102 bits (244), Expect = 4e-23
Identities = 61/169 (36%), Positives = 83/169 (49%), Gaps = 5/169 (2%)
Frame = +1
Query: 70 PDNFVFGQSG--AGNNWAKG--HYTEVC*ASRFRLRRSSQGSKSCDCLQGFQXXXXXXXX 237
P+N + ++G AGNNWA G H + + R + GS D L+GF
Sbjct: 88 PENILITKNGGGAGNNWANGYSHAERIFEDIMDMIDREADGS---DSLEGFSLLHSIAGG 144
Query: 238 XXXXXXXXXXXKIREEYPDRIMNTYSVVP-SPKVSDTVVEPYNATLSVHQLVENTDETYC 414
++ + YP +I+ TYSV P S VSD VV+PYN+ L++ +L N D
Sbjct: 145 TGSGLGSFLLERLNDRYPKKIIQTYSVFPNSQSVSDVVVQPYNSLLALKRLTLNADSVVV 204
Query: 415 IDNEALYDICFRTLKLSTPTYGDLNHLVSLTMSGVTTCLRFPGQLTADL 561
+DN AL I L PT+ N LVS MS TT LR+PG + DL
Sbjct: 205 LDNAALAHIAADRLHTQNPTFHQQNQLVSTVMSASTTTLRYPGYMNNDL 253
>SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 667
Score = 29.5 bits (63), Expect = 0.35
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = -1
Query: 129 VVSLSPVVTGAGLSENEVVGRKISRRIRS 43
++S P+ LSE++V GR ISRRI S
Sbjct: 556 ILSFDPLPPDTYLSESQVFGRDISRRIAS 584
>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 781
Score = 27.9 bits (59), Expect = 1.1
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -1
Query: 165 SKTESTSSAHFRVVSLSPVVTGAGLSENEVVGRKISRRIRSPGD 34
S +ES SS + +PV G +N + RK S +I+SP D
Sbjct: 18 SDSESPSSRSIGSGTPAPVRKGLSKFKNSFLSRKNSSQIKSPSD 61
>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 577
Score = 27.1 bits (57), Expect = 1.9
Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = +2
Query: 197 VYKD-SNSHTPSEAVLAPVWAPFSSLKY 277
VYK S HT S L +W PFS L Y
Sbjct: 238 VYKTISPLHTQSTDKLYTIWTPFSELHY 265
>SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 447
Score = 26.6 bits (56), Expect = 2.5
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +2
Query: 143 ELVDSVLDVVRKEASHVIVYKDSNSHTP 226
+L VLD+ +K+ S V+ YK + + +P
Sbjct: 133 KLATDVLDIEKKDGSWVVTYKGTKAGSP 160
>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
complex subunit Taf111|Schizosaccharomyces pombe|chr
1|||Manual
Length = 979
Score = 26.2 bits (55), Expect = 3.3
Identities = 12/52 (23%), Positives = 24/52 (46%)
Frame = +2
Query: 65 FRPTTSFSDSPAPVTTGLRDTTRKCAELVDSVLDVVRKEASHVIVYKDSNSH 220
F+P + SP V +D + EL+ + ++ + +H I+ + S H
Sbjct: 422 FKPNAAIVFSPLIVRKRSKDKHKSERELIPTTKEITMGDTTHAILVEFSEEH 473
>SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr
3|||Manual
Length = 396
Score = 26.2 bits (55), Expect = 3.3
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -3
Query: 460 VSACGSRCHRGLHC 419
VSAC CH+GL C
Sbjct: 210 VSACAFACHKGLSC 223
>SPAC11D3.10 |||nifs homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 434
Score = 25.8 bits (54), Expect = 4.4
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -3
Query: 460 VSACGSRCHRGLHC 419
VSAC CH+GL C
Sbjct: 207 VSACAFSCHKGLGC 220
>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
Pop2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 703
Score = 25.4 bits (53), Expect = 5.8
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = -3
Query: 400 LCFLLTDVPKVWH 362
L FLLTD+ K+WH
Sbjct: 661 LRFLLTDLTKIWH 673
>SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 449
Score = 25.0 bits (52), Expect = 7.6
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = +1
Query: 397 TDETYCIDNEALYDICFRTLKLSTPTYGDLNHLVS 501
T Y + E YDIC L T LNHL+S
Sbjct: 256 TSFLYALAGELDYDICVLNLAEKGLTDDRLNHLLS 290
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,471,244
Number of Sequences: 5004
Number of extensions: 50850
Number of successful extensions: 182
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -