Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_C09
         (425 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro...   196   2e-51
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos...   194   4e-51
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch...   194   5e-51
SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        26   2.1  
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    25   3.7  
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz...    25   3.7  
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa...    25   4.9  
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos...    25   4.9  
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    25   4.9  
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc...    25   6.5  
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||...    24   8.6  
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    24   8.6  
SPAC17H9.07 |||signal recognition particle subunit Srp21 |Schizo...    24   8.6  
SPAC2F7.02c |||phosphoprotein phosphatase|Schizosaccharomyces po...    24   8.6  
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    24   8.6  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    24   8.6  
SPBC1198.02 |dea2||adenine deaminase Dea2|Schizosaccharomyces po...    24   8.6  

>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
           protein S4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 262

 Score =  196 bits (477), Expect = 2e-51
 Identities = 87/115 (75%), Positives = 98/115 (85%)
 Frame = +3

Query: 81  PSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVV 260
           PS GPHK RECLPL++FLRNRLKYAL G EV  I+ QRLIKVDGKVRTD T+P GFMDV+
Sbjct: 31  PSPGPHKARECLPLIVFLRNRLKYALNGREVKAILMQRLIKVDGKVRTDSTFPTGFMDVI 90

Query: 261 SIEKTNELFRLIYDVNGRFTIHRITPEEAKYKLCKVRRVATGPKSVPYLVTHDGR 425
           S+EKT E FRL+YD+ GRFT+HRIT EEAKYKLCKV+RV  G K VP+LVTHDGR
Sbjct: 91  SVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGR 145



 Score = 45.6 bits (103), Expect = 3e-06
 Identities = 20/35 (57%), Positives = 25/35 (71%)
 Frame = +2

Query: 5   EEHLKRLNAPKAWMLDKLGGVYAPRPLDGSPQAAR 109
           ++HLKR+ AP  W+LDKL G YAP+P  G P  AR
Sbjct: 6   KKHLKRVAAPHHWLLDKLSGTYAPKPSPG-PHKAR 39


>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
           S4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 262

 Score =  194 bits (474), Expect = 4e-51
 Identities = 86/115 (74%), Positives = 98/115 (85%)
 Frame = +3

Query: 81  PSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVV 260
           PS GPHK RECLPL++FLRNRLKYAL G EV  I+ QRLIKVDGKVRTD T+P GFMDV+
Sbjct: 31  PSPGPHKARECLPLIVFLRNRLKYALNGREVKAILMQRLIKVDGKVRTDSTFPTGFMDVI 90

Query: 261 SIEKTNELFRLIYDVNGRFTIHRITPEEAKYKLCKVRRVATGPKSVPYLVTHDGR 425
           S++KT E FRL+YD+ GRFT+HRIT EEAKYKLCKV+RV  G K VP+LVTHDGR
Sbjct: 91  SVDKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGR 145



 Score = 45.6 bits (103), Expect = 3e-06
 Identities = 20/35 (57%), Positives = 25/35 (71%)
 Frame = +2

Query: 5   EEHLKRLNAPKAWMLDKLGGVYAPRPLDGSPQAAR 109
           ++HLKR+ AP  W+LDKL G YAP+P  G P  AR
Sbjct: 6   KKHLKRVAAPHHWLLDKLSGTYAPKPSPG-PHKAR 39


>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
           S4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 262

 Score =  194 bits (473), Expect = 5e-51
 Identities = 86/115 (74%), Positives = 98/115 (85%)
 Frame = +3

Query: 81  PSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVV 260
           PS GPHK RECLPL++FLRNRLKYAL G EV  I+ QRLI+VDGKVRTD T+P GFMDV+
Sbjct: 31  PSPGPHKARECLPLIVFLRNRLKYALNGREVKAILMQRLIQVDGKVRTDSTFPTGFMDVI 90

Query: 261 SIEKTNELFRLIYDVNGRFTIHRITPEEAKYKLCKVRRVATGPKSVPYLVTHDGR 425
           S+EKT E FRL+YD+ GRFT+HRIT EEAKYKLCKV+RV  G K VP+LVTHDGR
Sbjct: 91  SVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGR 145



 Score = 45.6 bits (103), Expect = 3e-06
 Identities = 20/35 (57%), Positives = 25/35 (71%)
 Frame = +2

Query: 5   EEHLKRLNAPKAWMLDKLGGVYAPRPLDGSPQAAR 109
           ++HLKR+ AP  W+LDKL G YAP+P  G P  AR
Sbjct: 6   KKHLKRVAAPHHWLLDKLSGTYAPKPSPG-PHKAR 39


>SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score = 26.2 bits (55), Expect = 2.1
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +1

Query: 250 WTLYPLRKQMSYSV*YMM*TEGSLSTVSHLKKPST 354
           +TLYP +      + ++  TE S+ T+SH+  P T
Sbjct: 86  YTLYPFQSITLPLMPFLEKTESSILTISHVYSPPT 120


>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1679

 Score = 25.4 bits (53), Expect = 3.7
 Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
 Frame = -2

Query: 403 YGTLLGPVATRRTLHSLYLASSGVIRWIVNLPFTSYIKRNNSFVFSMDTTSINPAGYVGS 224
           YGTLL        L  L   +   + +  +LP   ++    +F  ++  T+    G + S
Sbjct: 578 YGTLLMHFEPTYALSRLVSFAPPEVTF--SLPELDFLTSVFNFPLALRNTATRILGIILS 635

Query: 223 VR--TFPSTLMRRCFTILSTS 167
            +  T  S ++  CFTI+STS
Sbjct: 636 TKDSTRISEVLSSCFTIISTS 656


>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 873

 Score = 25.4 bits (53), Expect = 3.7
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = -2

Query: 385 PVATRRTLHSLYLASSGVIRWIVNLPFTSYIKRNNSFVFS 266
           P+  RRT   L L+   +  W     F S + RN   +FS
Sbjct: 423 PILKRRTPQELLLSGRDLTPWPQIRRFDSLLARNRGDIFS 462


>SPAC19A8.08 |upf2||nonsense-mediated decay protein
           Upf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1049

 Score = 25.0 bits (52), Expect = 4.9
 Identities = 18/52 (34%), Positives = 27/52 (51%)
 Frame = +3

Query: 255 VVSIEKTNELFRLIYDVNGRFTIHRITPEEAKYKLCKVRRVATGPKSVPYLV 410
           +VS+E TNE+    YD+N + + +R+        LC + R  T    VPY V
Sbjct: 455 MVSLELTNEMALEFYDLNTKASRNRLIK-----ALCTIPR--TSSFLVPYYV 499


>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
           Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 953

 Score = 25.0 bits (52), Expect = 4.9
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +3

Query: 120 LVIFLRNRLKYALTGNEVLKIV 185
           L+ F+  RL++ LT  E+LKI+
Sbjct: 145 LIDFMNTRLQHRLTEGEILKIL 166


>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1016

 Score = 25.0 bits (52), Expect = 4.9
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 295 IKRNNSFVFSMDTTSINPAGYVGSV 221
           +K+ ++ VF     +INPA Y G+V
Sbjct: 40  LKKRDTNVFDSVVDTINPASYFGTV 64


>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
           Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 934

 Score = 24.6 bits (51), Expect = 6.5
 Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
 Frame = +3

Query: 42  GCWTSWAACTRR-GPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDG-- 212
           G +   AA T+  G    P    +CL  + F+   +   LT  E   ++KQ   KV G  
Sbjct: 216 GTFYERAATTQTPGSKPVPEGNSDCLSGISFVITGILETLTRQEATDLIKQYGGKVTGAP 275

Query: 213 KVRTD 227
            VRTD
Sbjct: 276 SVRTD 280


>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 923

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +3

Query: 105 RECLPLVIFLRNRLK-YALTGNEVLKIVKQRLIKV 206
           +ECLP   F +N+L  Y L  + VL++ K+R + V
Sbjct: 52  KECLPKFSF-QNKLDFYFLFSDRVLQLQKERKVLV 85


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 18/59 (30%), Positives = 28/59 (47%)
 Frame = -2

Query: 295 IKRNNSFVFSMDTTSINPAGYVGSVRTFPSTLMRRCFTILSTSLPVSAYLSRFRRKITS 119
           I RN S+   MD      + YV  +  + S  +  C  +  ++LP S YLS  R ++ S
Sbjct: 273 ICRNYSY---MDILLSKKSKYVKKLEKYWSIYLSNCKKLGISTLPPSNYLSPNRAELES 328


>SPAC17H9.07 |||signal recognition particle subunit Srp21
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 120

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 11/41 (26%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = +3

Query: 123 VIFLRNRLKYALTGNEVLKIVKQRLI--KVDGKVRTDPTYP 239
           ++ + N+L Y  TGNE+    +Q ++   V  + + +P+ P
Sbjct: 67  LLLIANKLSYVSTGNEIPPEPEQEVVASPVTEQKKAEPSAP 107


>SPAC2F7.02c |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 325

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -1

Query: 230 GVSPHFPVHFDETLLHNLKHLIAGERVLEPISQED 126
           G  P  P+ F +  L  +K    G  +L PI++ED
Sbjct: 120 GEQPTEPIDFADPPLPEVKRYGEGNWLLPPIAKED 154


>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 14/55 (25%), Positives = 30/55 (54%)
 Frame = +3

Query: 195 LIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVNGRFTIHRITPEEAKYKL 359
           LI++  + R D  + + ++ ++   K  +  RLI  ++   +  R+T E+AK+ L
Sbjct: 326 LIELSQEHRLDEFFVSYWVSLIKSRKQKDKKRLISLLDTSISQIRVTHEQAKFLL 380


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 12/50 (24%), Positives = 27/50 (54%)
 Frame = +3

Query: 252  DVVSIEKTNELFRLIYDVNGRFTIHRITPEEAKYKLCKVRRVATGPKSVP 401
            +V S+EK N++F + Y+V  +     +   +   K+  ++ ++   K+VP
Sbjct: 1718 NVSSLEKCNQIFSIFYEVFFQHPSTNVYANDEGIKIGALQIISFFLKNVP 1767


>SPBC1198.02 |dea2||adenine deaminase Dea2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 367

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
 Frame = +3

Query: 168 EVLKIVKQRLIKVDGKV--RTDPTYPAGFMDVVSIEKTNELFRLIYDVNGRFTIHRITPE 341
           EV K+  ++ I+  G      DP+Y    +D +S+++ +   RL+ D   +  + R+  E
Sbjct: 194 EVYKLAAEKGIRRTGHAGEEGDPSYIRSGLDNLSLQRIDHGIRLVED---KELMKRVAEE 250

Query: 342 EAKYKLC 362
                +C
Sbjct: 251 NIMLTMC 257


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,831,620
Number of Sequences: 5004
Number of extensions: 36245
Number of successful extensions: 135
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 152416050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)