Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_C09
(425 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0058 + 17548945-17548947,17549234-17549281,17549618-175496... 170 3e-43
02_01_0047 - 316960-317397,317647-317744,317837-318017,318122-31... 165 1e-41
01_03_0277 + 14496298-14496300,14496875-14496952,14497061-144972... 165 1e-41
02_01_0285 - 1913425-1914065,1914094-1914177,1914249-1915140,191... 27 4.8
12_01_0337 - 2591689-2593839 27 6.3
01_06_0627 - 30705604-30706977 27 8.3
01_01_0001 + 2449-2616,3357-3455,4457-4560,6136-6944,7028-7150,7... 27 8.3
>05_04_0058 +
17548945-17548947,17549234-17549281,17549618-17549695,
17549952-17550132,17550223-17550320,17550827-17551258
Length = 279
Score = 170 bits (414), Expect = 3e-43
Identities = 78/115 (67%), Positives = 91/115 (79%)
Frame = +3
Query: 81 PSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVV 260
PS+GPHK RECLPL++ LRNRLKYALT EV+ I+ QR + VDGKVRTD TYPAGFMDVV
Sbjct: 47 PSSGPHKARECLPLILILRNRLKYALTYREVISILMQRHVMVDGKVRTDKTYPAGFMDVV 106
Query: 261 SIEKTNELFRLIYDVNGRFTIHRITPEEAKYKLCKVRRVATGPKSVPYLVTHDGR 425
SI KT E FRL+YD GRF +H I E+AK+KLCKVR V G K +P+L T+DGR
Sbjct: 107 SIAKTGENFRLLYDTKGRFRLHSIKDEDAKFKLCKVRSVQFGQKGIPFLNTNDGR 161
Score = 52.8 bits (121), Expect = 1e-07
Identities = 23/35 (65%), Positives = 27/35 (77%)
Frame = +2
Query: 5 EEHLKRLNAPKAWMLDKLGGVYAPRPLDGSPQAAR 109
++HLKRLNAP WMLDKLGG +AP+P G P AR
Sbjct: 22 KKHLKRLNAPSHWMLDKLGGAFAPKPSSG-PHKAR 55
>02_01_0047 -
316960-317397,317647-317744,317837-318017,318122-318199,
319023-319025
Length = 265
Score = 165 bits (402), Expect = 1e-41
Identities = 74/115 (64%), Positives = 90/115 (78%)
Frame = +3
Query: 81 PSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVV 260
PS+GPHK RECLPL++ +RNRLKYALT EV+ I+ QR + VDGKVRTD TYPAGFMDV+
Sbjct: 31 PSSGPHKSRECLPLILIIRNRLKYALTYREVISILMQRHVLVDGKVRTDKTYPAGFMDVI 90
Query: 261 SIEKTNELFRLIYDVNGRFTIHRITPEEAKYKLCKVRRVATGPKSVPYLVTHDGR 425
SI KT E +RL+YD GRF + + E+AK+KLCKVR V G K +PYL T+DGR
Sbjct: 91 SIPKTGENYRLLYDTKGRFRLQSVKDEDAKFKLCKVRSVQFGQKGIPYLNTYDGR 145
Score = 53.6 bits (123), Expect = 6e-08
Identities = 23/35 (65%), Positives = 28/35 (80%)
Frame = +2
Query: 5 EEHLKRLNAPKAWMLDKLGGVYAPRPLDGSPQAAR 109
++HLKRLNAPK WMLDKLGG +AP+P G P +R
Sbjct: 6 KKHLKRLNAPKHWMLDKLGGAFAPKPSSG-PHKSR 39
>01_03_0277 +
14496298-14496300,14496875-14496952,14497061-14497241,
14497348-14497445,14497542-14497979
Length = 265
Score = 165 bits (402), Expect = 1e-41
Identities = 74/115 (64%), Positives = 90/115 (78%)
Frame = +3
Query: 81 PSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVV 260
PS+GPHK RECLPL++ +RNRLKYALT EV+ I+ QR + VDGKVRTD TYPAGFMDV+
Sbjct: 31 PSSGPHKSRECLPLILIIRNRLKYALTYREVISILMQRHVLVDGKVRTDKTYPAGFMDVI 90
Query: 261 SIEKTNELFRLIYDVNGRFTIHRITPEEAKYKLCKVRRVATGPKSVPYLVTHDGR 425
SI KT E +RL+YD GRF + + E+AK+KLCKVR V G K +PYL T+DGR
Sbjct: 91 SIPKTGENYRLLYDTKGRFRLQSVKDEDAKFKLCKVRSVQFGQKGIPYLNTYDGR 145
Score = 53.6 bits (123), Expect = 6e-08
Identities = 23/35 (65%), Positives = 28/35 (80%)
Frame = +2
Query: 5 EEHLKRLNAPKAWMLDKLGGVYAPRPLDGSPQAAR 109
++HLKRLNAPK WMLDKLGG +AP+P G P +R
Sbjct: 6 KKHLKRLNAPKHWMLDKLGGAFAPKPSSG-PHKSR 39
>02_01_0285 -
1913425-1914065,1914094-1914177,1914249-1915140,
1915205-1915249,1915335-1915870,1915987-1916041
Length = 750
Score = 27.5 bits (58), Expect = 4.8
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = +3
Query: 285 FRLIYDVNGRFTIHRITPEEAKYKLCKVRRVATGP 389
+ LIYD+ G + + P++A L + V T P
Sbjct: 147 YALIYDIQGSLALPILDPDDASSPLAVLELVTTAP 181
>12_01_0337 - 2591689-2593839
Length = 716
Score = 27.1 bits (57), Expect = 6.3
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -2
Query: 421 PSCVTRYGTLLGPVATRRTLHSLYLASSGVIRWIVNLPFTSYI 293
P C + Y +L P+A + LH+ + S I + LP S +
Sbjct: 99 PRCASAYAAVLVPLAEAKHLHAAHPVSVRAIHLGLLLPLVSLL 141
>01_06_0627 - 30705604-30706977
Length = 457
Score = 26.6 bits (56), Expect = 8.3
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = -1
Query: 419 VVRHQVRHALGAGRDAPHLAQLVLGFFRCDTVDSEPSVHI 300
V+R V R P +A LVL F + VD+ ++H+
Sbjct: 76 VLRRSVPSLASLLRSIPSVAALVLDIFCAEAVDAAAALHV 115
>01_01_0001 +
2449-2616,3357-3455,4457-4560,6136-6944,7028-7150,
7232-7320,7408-7608,8210-8311,9104-9187,9232-9244,
9504-9562
Length = 616
Score = 26.6 bits (56), Expect = 8.3
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +3
Query: 96 HKLRECL-PLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTY 236
H CL PL++ +RN L + + +LKI +R +++ K+R Y
Sbjct: 545 HLEENCLEPLLVDMRNDLSCEMFNDNMLKINVKRCVRMAIKLRKKYIY 592
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,005,975
Number of Sequences: 37544
Number of extensions: 265701
Number of successful extensions: 942
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 941
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 790518168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -