Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_C09
         (425 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   1.9  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   1.9  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   5.8  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   5.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   5.8  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   7.6  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 243 GFMDVVSIEKTNELFRLIYDVNG 311
           G + + +I+KTNE + L   VNG
Sbjct: 738 GTLSINNIQKTNEGYYLCEAVNG 760



 Score = 22.2 bits (45), Expect = 2.5
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +3

Query: 141 RLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPA 242
           R K+ LTG   L   K RL+  +      P +P+
Sbjct: 182 RTKHRLTGETRLSATKGRLVITEPVGSVRPKFPS 215


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 297  YDVNGRFTIHRITPEEAKYKLCKVRR 374
            ++VN   TIHR   +E   K+C   R
Sbjct: 1681 HNVNKHCTIHRTQVKETDDKICFTMR 1706


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 10/40 (25%), Positives = 21/40 (52%)
 Frame = +3

Query: 183 VKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYD 302
           VKQ ++ V+    TDP Y     + +  E ++ + ++ Y+
Sbjct: 145 VKQLIVGVNKMDMTDPPYSEARFEEIKKEVSSYIKKIGYN 184


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = +3

Query: 159 TGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVNGRF 317
           T +++    + R+ ++   VRT    P GF D+V  +K  E   L   +  R+
Sbjct: 733 TMSQMPPTAQPRMERLAEAVRTASQIPQGFKDLVQ-KKCEERGILFMPIPNRY 784


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 10/17 (58%), Positives = 11/17 (64%), Gaps = 1/17 (5%)
 Frame = -3

Query: 93   DPSR-GRGAYTPPSLSN 46
            DPS   RG YTPP  +N
Sbjct: 988  DPSPFKRGRYTPPQPAN 1004


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 20.6 bits (41), Expect = 7.6
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -2

Query: 127 ITSGKHSRSLWGPVEGPRRVHAAQL 53
           + SG+  +S  GP  GP     A++
Sbjct: 372 LLSGRSQKSTTGPPPGPTPAQKARM 396


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,155
Number of Sequences: 438
Number of extensions: 2556
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10997463
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)