Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_C08
(207 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0364 - 18020249-18020737,18021075-18021502,18021563-180216... 29 0.51
10_06_0162 - 11348250-11349531,11349571-11349671 28 1.2
11_06_0442 - 23622633-23623000,23623149-23623721,23624795-236253... 26 3.6
01_07_0019 + 40494709-40494767,40495619-40495703,40495777-404958... 26 3.6
01_06_1648 - 38897268-38897480,38897816-38897884,38899712-38900038 26 3.6
01_06_0554 + 30179641-30179658,30179725-30180126,30180580-301808... 26 4.8
01_05_0035 + 17440828-17441364 26 4.8
01_03_0050 + 11959421-11959736,11959892-11959960,11960641-119609... 26 4.8
04_03_0826 + 20103105-20103697,20104222-20104391,20104487-201047... 25 8.4
03_06_0596 + 34964109-34964189,34964286-34964481,34964567-349647... 25 8.4
03_04_0028 + 16604137-16604142,16604513-16604848 25 8.4
>12_02_0364 -
18020249-18020737,18021075-18021502,18021563-18021649,
18022059-18022192,18023051-18023053,18023129-18023187,
18023429-18023887
Length = 552
Score = 29.1 bits (62), Expect = 0.51
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = -2
Query: 149 IFPLCVCVFCWSFVSSLLIVTDILDLWLIIFAVCLFFFVSFVASCEFLQ 3
+ PL WS LL + L+ A+ L FF+SF CE +Q
Sbjct: 105 LLPLAFPALGWSGTFPLLASSVSSSSLLLALAISLSFFLSFSFRCELMQ 153
>10_06_0162 - 11348250-11349531,11349571-11349671
Length = 460
Score = 27.9 bits (59), Expect = 1.2
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = +1
Query: 10 NSHEATKLTKKKRQTAKMISQRSRMSVTMRREDTKDQQKTHTH 138
N H+A + +K T + I+ S++ TMRR + ++++ H H
Sbjct: 333 NPHDAARTFRK---TLEFIAWYSKLVTTMRRAEELERREPHPH 372
>11_06_0442 -
23622633-23623000,23623149-23623721,23624795-23625335,
23625807-23625982,23626081-23626804
Length = 793
Score = 26.2 bits (55), Expect = 3.6
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -2
Query: 119 WSFVSSLLIVTDILDLWL 66
WSF+SSL T + +LWL
Sbjct: 262 WSFMSSLTNCTQLTNLWL 279
>01_07_0019 +
40494709-40494767,40495619-40495703,40495777-40495836,
40495934-40496044,40496127-40496204,40496276-40496347,
40496944-40497057,40498034-40498538,40499011-40499108,
40499185-40499215,40499346-40499520,40499849-40500008,
40501436-40501855,40502313-40503203
Length = 952
Score = 26.2 bits (55), Expect = 3.6
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = +1
Query: 25 TKLTKKKRQTAKMISQRSRMSVTMRREDTK--DQQKTHTHNGKIHCKMKELTKTKPI 189
TK K+K TAK S R V+ +DT+ D+ + + K+ K+ + +K +
Sbjct: 260 TKKAKEKDATAKKASTRPAKGVSKPSQDTEEDDEPEVELESKKVVKKVSKSSKESDV 316
>01_06_1648 - 38897268-38897480,38897816-38897884,38899712-38900038
Length = 202
Score = 26.2 bits (55), Expect = 3.6
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = -2
Query: 200 FLVQIGLVLVNSFILQCIF---PLCVCVFCWSFVSSLLIVTDILDLWLIIF 57
FLV +GLVL+ SF L I P + V + V+ L+IV L IF
Sbjct: 134 FLVGMGLVLITSFYLTVILDAHPPLITVLLFVPVTVLVIVAVCACAGLAIF 184
>01_06_0554 +
30179641-30179658,30179725-30180126,30180580-30180892,
30180966-30181358,30181442-30182427
Length = 703
Score = 25.8 bits (54), Expect = 4.8
Identities = 10/44 (22%), Positives = 20/44 (45%)
Frame = +1
Query: 1 CCRNSHEATKLTKKKRQTAKMISQRSRMSVTMRREDTKDQQKTH 132
CC +A ++ + A+ I + + MR+E+ + K H
Sbjct: 519 CCLKDRDAQRIVNALLEHARKIKEMHNFNSEMRKEEFSAKLKVH 562
>01_05_0035 + 17440828-17441364
Length = 178
Score = 25.8 bits (54), Expect = 4.8
Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = -2
Query: 98 LIVTDILDLWLIIF-AVCLFFFVSFVASCE 12
L+V D+ L++ + C+FF +S VA+CE
Sbjct: 82 LLVHDVRTFVLLVAESFCIFFVMSGVAACE 111
>01_03_0050 +
11959421-11959736,11959892-11959960,11960641-11960979,
11961090-11961152,11962472-11962962,11963773-11964441
Length = 648
Score = 25.8 bits (54), Expect = 4.8
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = +1
Query: 13 SHEATKL--TKKKRQTAKMISQRSRMSVTMRREDTKDQQKTHTHNGKIHCKMKELTKTK 183
S EA+K TKKK ++ +++ ++ T ++ K KTH+ GK K + TK
Sbjct: 544 SKEASKTPATKKKTESTSPAAKKLKIEETTAPDEGKKAVKTHS-TGKKRKAGKSCSSTK 601
>04_03_0826 +
20103105-20103697,20104222-20104391,20104487-20104716,
20104825-20104933,20104967-20105154,20105818-20105919,
20106114-20106395,20106504-20106625,20106708-20107020,
20107096-20107329,20107477-20107767,20107975-20108286
Length = 981
Score = 25.0 bits (52), Expect = 8.4
Identities = 7/25 (28%), Positives = 16/25 (64%)
Frame = -2
Query: 152 CIFPLCVCVFCWSFVSSLLIVTDIL 78
C + C C+ +FV+++L + +I+
Sbjct: 862 CFYRYCTCILPCTFVNTMLAILNIM 886
>03_06_0596 +
34964109-34964189,34964286-34964481,34964567-34964775,
34964868-34964970,34965053-34965227,34965617-34965883,
34965966-34966311,34966396-34966533,34966645-34966770,
34966866-34967078,34967171-34967462,34967559-34967755,
34967844-34968194,34968290-34968874
Length = 1092
Score = 25.0 bits (52), Expect = 8.4
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = -2
Query: 152 CIFPLCVCVFCWSFVSSLLIVTDILDLWLIIFAVCLF 42
C P +C+ F++ L T+I LW + +C+F
Sbjct: 882 CTLP-AICLLTGKFITPEL--TNIASLWFMSLFICIF 915
>03_04_0028 + 16604137-16604142,16604513-16604848
Length = 113
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = +3
Query: 69 PKIEDVGDDEEGGHKRPTEDTHA*RKNTLQDER 167
P+ E+ DD G + PT + N LQ+++
Sbjct: 50 PQFEETEDDNAGANPTPTSNPSNPSPNNLQEQQ 82
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.315 0.120 0.358
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,040,336
Number of Sequences: 37544
Number of extensions: 60057
Number of successful extensions: 283
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 282
length of database: 14,793,348
effective HSP length: 48
effective length of database: 12,991,236
effective search space used: 259824720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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