Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_C07
         (50 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   0.40 
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    19   6.6  
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    19   6.6  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
          protein.
          Length = 463

 Score = 22.6 bits (46), Expect = 0.40
 Identities = 8/10 (80%), Positives = 10/10 (100%)
 Frame = -2

Query: 34 NLLRGYDNAL 5
          NLLRGYDN++
Sbjct: 12 NLLRGYDNSV 21


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
          protein.
          Length = 157

 Score = 18.6 bits (36), Expect = 6.6
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +3

Query: 6  RALSYPLNRLIIHMY 50
          RAL YP   +++H+Y
Sbjct: 13 RALKYP---MVVHVY 24


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
          protein.
          Length = 128

 Score = 18.6 bits (36), Expect = 6.6
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +3

Query: 6  RALSYPLNRLIIHMY 50
          RAL YP   +++H+Y
Sbjct: 13 RALKYP---MVVHVY 24


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,497
Number of Sequences: 438
Number of extensions: 70
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 0
effective length of database: 146,343
effective search space used:  2341488
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)