Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_C05
         (277 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32 |Schi...    27   0.49 
SPBC530.15c ||SPBC661.01|spermidine family transporter |Schizosa...    26   0.86 
SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|c...    25   2.6  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    24   3.5  
SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2...    24   3.5  
SPBC354.06 |mrps16||mitochondrial ribosomal protein subunit S16|...    23   6.1  

>SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 749

 Score = 27.1 bits (57), Expect = 0.49
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 250 SMKYGLCSYIFRNLLTARFNIRSQSVLPTEIQNFN 146
           S K      + +NL T  + I+SQ +LPT + + N
Sbjct: 337 SEKVSFMESLSKNLTTFPYRIQSQKILPTLLDHLN 371


>SPBC530.15c ||SPBC661.01|spermidine family transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 516

 Score = 26.2 bits (55), Expect = 0.86
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -2

Query: 75  IMLGLISIVTYKIRYLTSCYSGTS 4
           I  G+I+I    I Y+  CYSG S
Sbjct: 424 IGFGIITIFQQTINYIIDCYSGCS 447


>SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 300

 Score = 24.6 bits (51), Expect = 2.6
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 129 DFNKKRLKFWISVGKTD*DRILKRAVRRFRNIYEH 233
           DF  K L+    + +TD   +L + +  FRN YEH
Sbjct: 150 DFYIKNLEKTEDLIRTDSHFVLNKELLSFRNDYEH 184


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1919

 Score = 24.2 bits (50), Expect = 3.5
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -1

Query: 253 SSMKYGLCSYIFRNLLTARFNIRSQSVLPTEI 158
           SS++   C+Y+FR+++  RF  +S  +   EI
Sbjct: 351 SSLEQYHCTYLFRDVIGRRFLDQSSELQGIEI 382


>SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 334

 Score = 24.2 bits (50), Expect = 3.5
 Identities = 9/22 (40%), Positives = 18/22 (81%)
 Frame = +2

Query: 164 SR*NRLRSDIETGRQKVSKYIR 229
           +R +RL+ +IE GR+++ +Y+R
Sbjct: 236 ARESRLKVEIEQGRKQLKQYMR 257


>SPBC354.06 |mrps16||mitochondrial ribosomal protein subunit
           S16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 96

 Score = 23.4 bits (48), Expect = 6.1
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 135 NKKRLKFWISVGKTD*DRI 191
           N +R K+WISVG    D +
Sbjct: 62  NVERFKYWISVGAQPSDTV 80


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,021,945
Number of Sequences: 5004
Number of extensions: 16358
Number of successful extensions: 41
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 61717020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)