Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_C05
         (277 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0610 + 5030130-5030247,5030957-5033193                           26   5.0  
05_01_0426 + 3364341-3364713,3364823-3364963,3365389-3365510,336...    25   6.5  
05_01_0421 + 3308692-3309070,3309199-3309339,3309776-3309897,331...    25   6.5  

>12_01_0610 + 5030130-5030247,5030957-5033193
          Length = 784

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
 Frame = -3

Query: 251 FNEVWTMFVYISKPSDGPFQYPISICFTY*NPKFQSFFVEIQSFKCQISVSN-QLENPI 78
           FN V  M    S P +GP  YP+          +  +   +     Q++ SN Q+ENP+
Sbjct: 278 FNTVLVMTHCSSSPPEGPDGYPLEY------DSYARYCKNVVQRHIQVAASNTQMENPV 330


>05_01_0426 +
           3364341-3364713,3364823-3364963,3365389-3365510,
           3365939-3366202,3366289-3366419,3366819-3367026,
           3367121-3367186,3367276-3367353,3368038-3368079
          Length = 474

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 272 SMSISCIFNEVWTMFVYISKP 210
           S+SI C F E+W  F  +++P
Sbjct: 329 SISIICTFFEMWKQFSCVARP 349


>05_01_0421 +
           3308692-3309070,3309199-3309339,3309776-3309897,
           3310369-3310632,3310719-3310849,3311254-3311461,
           3311564-3311632,3311722-3311799,3312448-3312621
          Length = 521

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 272 SMSISCIFNEVWTMFVYISKP 210
           S+SI C F E+W  F  +++P
Sbjct: 331 SISIICTFFEMWKQFSCVARP 351


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,609,682
Number of Sequences: 37544
Number of extensions: 77490
Number of successful extensions: 115
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 14,793,348
effective HSP length: 69
effective length of database: 12,202,812
effective search space used: 268461864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)