Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_C05
         (277 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81463-11|CAC70074.2|  376|Caenorhabditis elegans Hypothetical p...    27   1.9  
Z81463-10|CAB03854.4|  352|Caenorhabditis elegans Hypothetical p...    27   1.9  
Z81129-8|CAC70106.2|  376|Caenorhabditis elegans Hypothetical pr...    27   1.9  
Z81129-7|CAB03409.4|  352|Caenorhabditis elegans Hypothetical pr...    27   1.9  
AF003151-17|ABJ99068.1|   99|Caenorhabditis elegans Hypothetical...    27   1.9  

>Z81463-11|CAC70074.2|  376|Caenorhabditis elegans Hypothetical
           protein C06B8.2b protein.
          Length = 376

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -2

Query: 198 VSISDLNLFYLLKSKISIFFC*NPKFQV 115
           V++S L L  +L +   I +C NPKF+V
Sbjct: 12  VTLSFLALLLILHNSDRIIYCVNPKFEV 39


>Z81463-10|CAB03854.4|  352|Caenorhabditis elegans Hypothetical
           protein C06B8.2a protein.
          Length = 352

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -2

Query: 198 VSISDLNLFYLLKSKISIFFC*NPKFQV 115
           V++S L L  +L +   I +C NPKF+V
Sbjct: 12  VTLSFLALLLILHNSDRIIYCVNPKFEV 39


>Z81129-8|CAC70106.2|  376|Caenorhabditis elegans Hypothetical
           protein C06B8.2b protein.
          Length = 376

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -2

Query: 198 VSISDLNLFYLLKSKISIFFC*NPKFQV 115
           V++S L L  +L +   I +C NPKF+V
Sbjct: 12  VTLSFLALLLILHNSDRIIYCVNPKFEV 39


>Z81129-7|CAB03409.4|  352|Caenorhabditis elegans Hypothetical
           protein C06B8.2a protein.
          Length = 352

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -2

Query: 198 VSISDLNLFYLLKSKISIFFC*NPKFQV 115
           V++S L L  +L +   I +C NPKF+V
Sbjct: 12  VTLSFLALLLILHNSDRIIYCVNPKFEV 39


>AF003151-17|ABJ99068.1|   99|Caenorhabditis elegans Hypothetical
          protein D1007.19 protein.
          Length = 99

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -2

Query: 84 PDIIMLGLISIVTYKIRYLTSCYSGTSC 1
          P +I LGL+ ++ + + Y T C   +SC
Sbjct: 2  PGLIGLGLLILLGFHVTYSTQCDCNSSC 29


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,375,303
Number of Sequences: 27780
Number of extensions: 85627
Number of successful extensions: 154
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 238114316
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)