Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_C04
(325 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 36 0.002
SPAC1071.09c |||DNAJ domain protein, DNAJC9 family|Schizosacchar... 33 0.008
SPAC1782.03 |||microfibrillar-associated protein family protein|... 32 0.025
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|... 31 0.033
SPBC582.10c |||ATP-dependent DNA helicase Rhp16b |Schizosaccharo... 31 0.033
SPAC22E12.10c |etp1|cox15|mitochondrial type I [2Fe-2S] ferredox... 31 0.043
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos... 31 0.057
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 30 0.100
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 30 0.100
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 29 0.13
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po... 29 0.17
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1... 29 0.23
SPAC1250.02 |mug95||sequence orphan|Schizosaccharomyces pombe|ch... 29 0.23
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 28 0.30
SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces po... 28 0.30
SPAC12G12.11c |||DUF544 family protein|Schizosaccharomyces pombe... 28 0.40
SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyce... 27 0.70
SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb... 27 0.70
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 27 0.70
SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|c... 27 0.93
SPCC1393.02c |||non-specific DNA binding protein Spt2 |Schizosac... 27 0.93
SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ... 26 1.2
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 26 1.2
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 26 1.2
SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyc... 26 1.2
SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr 2... 25 2.1
SPBP8B7.10c |||U3 snoRNP-associated protein Utp16 |Schizosacchar... 25 2.1
SPCC126.04c |||SAGA complex subunit Sgf73 |Schizosaccharomyces p... 25 2.1
SPAC1952.17c ||SPAC890.01c|GTPase activating protein|Schizosacch... 25 2.1
SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces... 25 2.8
SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7 |S... 25 2.8
SPAC144.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 25 3.7
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S... 25 3.7
SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2 |S... 25 3.7
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p... 25 3.7
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc... 25 3.7
SPAC589.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 3.7
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo... 25 3.7
SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces p... 24 4.9
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy... 24 4.9
SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit ... 24 4.9
SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces pom... 24 4.9
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb... 24 4.9
SPAC13G7.03 |||up-frameshift suppressor3 family|Schizosaccharomy... 24 4.9
SPCC777.09c |arg1||acetylornithine aminotransferase|Schizosaccha... 24 4.9
SPBC3D6.09 |dpb4||DNA polymerase epsilon subunit Dpb4 |Schizosac... 24 4.9
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 24 4.9
SPAC4F10.09c |||ribosome biogenesis protein Noc1 |Schizosaccharo... 24 6.5
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|... 24 6.5
SPBC19C2.13c |||conserved eukaryotic protein|Schizosaccharomyces... 24 6.5
SPAC26F1.02 |||pinin homologue|Schizosaccharomyces pombe|chr 1||... 23 8.6
SPCC63.05 |||TAP42 family protein |Schizosaccharomyces pombe|chr... 23 8.6
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz... 23 8.6
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |... 23 8.6
SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ... 23 8.6
SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit... 23 8.6
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 35.5 bits (78), Expect = 0.002
Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 4/97 (4%)
Frame = +1
Query: 46 EDCNRRRKKTATAEERRLQPAEER--RLQSPKKEDCNRRRKKTAIAEERRLQSPKKENCN 219
E ++ + EE R + E+R R Q K+++ R++++ ++ R + KK+
Sbjct: 622 EQAAQKALEAKRQEEARKKREEQRLKREQEKKQQELERQKREEKQKQKEREKKLKKQQQE 681
Query: 220 RRRMKTAIAEERRLQSPKK--EDRNRRRKTTAIAEER 324
R K A + R + K+ E+R RR K EER
Sbjct: 682 ADREKMAREQRLREEEEKRILEERKRREKLDKEEEER 718
Score = 34.7 bits (76), Expect = 0.003
Identities = 20/90 (22%), Positives = 49/90 (54%), Gaps = 3/90 (3%)
Frame = +2
Query: 65 ERRLQPPKKEDCNLPKKEDSNRRRKKTAIAE---ERRLQSPKKEDCNRRRKKTAIAEE*K 235
E+ + KK+ L K+E+ +RR+ +AE ++ L++ ++E+ ++R++ + E +
Sbjct: 593 EKEKKRDKKKQLKLAKEEE-RQRREAERLAEQAAQKALEAKRQEEARKKREEQRLKREQE 651
Query: 236 LQSPKKEDCNRRRKKTAIAEERRLQSPKKE 325
+ + E R K+ E++L+ ++E
Sbjct: 652 KKQQELERQKREEKQKQKEREKKLKKQQQE 681
Score = 33.9 bits (74), Expect = 0.006
Identities = 17/89 (19%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Frame = +1
Query: 40 KKEDCNRRRK--KTATAEERRLQPAEERRLQSPKKEDCNRRRKKTAIAEERRLQSPKKEN 213
++E+ ++R+ + +E++ Q E ++ + +K+ ++ K E R + +++
Sbjct: 633 RQEEARKKREEQRLKREQEKKQQELERQKREEKQKQKEREKKLKKQQQEADREKMAREQR 692
Query: 214 CNRRRMKTAIAEERRLQSPKKEDRNRRRK 300
K + E +R + KE+ RRR+
Sbjct: 693 LREEEEKRILEERKRREKLDKEEEERRRR 721
Score = 33.5 bits (73), Expect = 0.008
Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 4/98 (4%)
Frame = +1
Query: 28 RRSWKKEDCNRRRKKTATAEERRLQPAEERRLQSPKKE-DCNRRRKKTAIAEERRL---Q 195
R KK D +++ K A EER+ + AE Q+ +K + R+ + EE+RL Q
Sbjct: 592 REKEKKRD-KKKQLKLAKEEERQRREAERLAEQAAQKALEAKRQEEARKKREEQRLKREQ 650
Query: 196 SPKKENCNRRRMKTAIAEERRLQSPKKEDRNRRRKTTA 309
K++ R++ + ++ R + KK+ + R+ A
Sbjct: 651 EKKQQELERQKREEKQKQKEREKKLKKQQQEADREKMA 688
Score = 33.1 bits (72), Expect = 0.011
Identities = 19/97 (19%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
Frame = +1
Query: 13 FGTRGRRSWKKEDCNRRRKKTATAEERRLQPAEERRLQSPKKEDCNR-RRKKTAIAEERR 189
F R ++++++ +R+ K E + +ER L+ ++++ R ++K+ +A+E
Sbjct: 552 FEQRVLQAYREKVAQQRQAKLLEEIEEENKRKQERELKKIREKEKKRDKKKQLKLAKEEE 611
Query: 190 LQSPKKENCNRRRMKTAIAEERRLQSPKKEDRNRRRK 300
Q + E + + A+ +R+ ++ KK + R ++
Sbjct: 612 RQRREAERLAEQAAQKALEAKRQEEARKKREEQRLKR 648
Score = 31.1 bits (67), Expect = 0.043
Identities = 22/102 (21%), Positives = 52/102 (50%), Gaps = 9/102 (8%)
Frame = +2
Query: 41 RKKTATAEERRLQPPKKEDCNLPKKEDSNRRRKKTAIAEERRLQSPKKEDCNRRR----- 205
RKK +R Q K+++ K+E+ +++++ ++++ ++ +++ +R
Sbjct: 638 RKKREEQRLKREQEKKQQELERQKREEKQKQKEREKKLKKQQQEADREKMAREQRLREEE 697
Query: 206 KKTAIAEE*KLQSPKKEDCNRRRK----KTAIAEERRLQSPK 319
+K + E + + KE+ RRR+ K + +ERRL+ K
Sbjct: 698 EKRILEERKRREKLDKEEEERRRRELLEKESEEKERRLREAK 739
Score = 30.3 bits (65), Expect = 0.075
Identities = 19/100 (19%), Positives = 51/100 (51%), Gaps = 3/100 (3%)
Frame = +2
Query: 35 AGRKKTATAEERRLQPPKKEDCNLPKKEDSNRRRKKTAIAEERRLQSPKKEDCNRRRKKT 214
A R+K A + +L +E+ ++ + + R+K ++++ KE+ +RR+
Sbjct: 559 AYREKVAQQRQAKLLEEIEEENKRKQERELKKIREKEKKRDKKKQLKLAKEEERQRREAE 618
Query: 215 AIAE---E*KLQSPKKEDCNRRRKKTAIAEERRLQSPKKE 325
+AE + L++ ++E+ ++R++ + E+ + + E
Sbjct: 619 RLAEQAAQKALEAKRQEEARKKREEQRLKREQEKKQQELE 658
Score = 28.7 bits (61), Expect = 0.23
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +2
Query: 26 EDGAGRKKTATAEERRLQPPKKEDCNLPKKEDSNRRR---KKTAIAEERRLQSPK 181
E A ++ EE+R+ +K L K+E+ RRR +K + +ERRL+ K
Sbjct: 685 EKMAREQRLREEEEKRILEERKRREKLDKEEEERRRRELLEKESEEKERRLREAK 739
Score = 24.6 bits (51), Expect = 3.7
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +3
Query: 135 ERRLQSPKKEDCNRRRKKIAIAEERKLQSPKNENCNRRRKKTAIAEER-RPQSPKKDDCN 311
ER+ + K++ R +K +E + E R ++ I EER R + K++
Sbjct: 658 ERQKREEKQKQKEREKKLKKQQQEADREKMAREQRLREEEEKRILEERKRREKLDKEEEE 717
Query: 312 RRRK 323
RRR+
Sbjct: 718 RRRR 721
>SPAC1071.09c |||DNAJ domain protein, DNAJC9
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 282
Score = 33.5 bits (73), Expect = 0.008
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Frame = +1
Query: 58 RRRKKTATAEERRLQPAEERRLQSPKKEDCNRRRKKTAIAEERRLQSPKKENCNRRRMKT 237
++RK+ A A ER Q AEE ++ E+ +RRK A EE + +R
Sbjct: 199 KKRKRRAKAAEREAQEAEELSMELGLDENLKKRRKAGASDEEALSALIRSRQKSRMYNLI 258
Query: 238 AIAEERRLQS---PKKEDRNRRRK 300
+ E + +S PKK ++R ++
Sbjct: 259 SNLESKYSKSSTKPKKSKKSRSKE 282
Score = 25.8 bits (54), Expect = 1.6
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +2
Query: 41 RKKTATAEERRLQPPKKEDCNLPKKEDSNRRRKKTAIAEE 160
RK+ A A ER Q ++ L E+ +RRK A EE
Sbjct: 201 RKRRAKAAEREAQEAEELSMELGLDENLKKRRKAGASDEE 240
>SPAC1782.03 |||microfibrillar-associated protein family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 355
Score = 31.9 bits (69), Expect = 0.025
Identities = 18/42 (42%), Positives = 24/42 (57%)
Frame = +1
Query: 40 KKEDCNRRRKKTATAEERRLQPAEERRLQSPKKEDCNRRRKK 165
K++ R+K A EERRL +EER Q K + +RR KK
Sbjct: 209 KEKSLELEREKMAI-EERRLMNSEEREAQDLKDAEASRRGKK 249
>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1184
Score = 31.5 bits (68), Expect = 0.033
Identities = 19/62 (30%), Positives = 34/62 (54%)
Frame = +2
Query: 44 KKTATAEERRLQPPKKEDCNLPKKEDSNRRRKKTAIAEERRLQSPKKEDCNRRRKKTAIA 223
+K E +RL+ KE+ L KKE+ R+ AEE+RLQ + + + +++A A
Sbjct: 715 RKEQAKEAKRLKKLAKEEKRLKKKEEKARK------AEEKRLQKERAKYAKQMSRESAHA 768
Query: 224 EE 229
++
Sbjct: 769 DQ 770
Score = 28.3 bits (60), Expect = 0.30
Identities = 28/87 (32%), Positives = 43/87 (49%)
Frame = +1
Query: 61 RRKKTATAEERRLQPAEERRLQSPKKEDCNRRRKKTAIAEERRLQSPKKENCNRRRMKTA 240
RR E + A+ER + KE +R KK A EE+RL+ KKE R+
Sbjct: 695 RRNVDPMVSELSERAAQERERKEQAKEA--KRLKKLA-KEEKRLK--KKEEKARK----- 744
Query: 241 IAEERRLQSPKKEDRNRRRKTTAIAEE 321
AEE+RLQ + + + + +A A++
Sbjct: 745 -AEEKRLQKERAKYAKQMSRESAHADQ 770
Score = 23.8 bits (49), Expect = 6.5
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +1
Query: 31 RSWKKEDCNRRRKKTATAEERRLQPAEERRLQSPKKEDCNRRRK 162
R K++ +R K EE+RL+ EE+ ++ +K R K
Sbjct: 713 RERKEQAKEAKRLKKLAKEEKRLKKKEEKARKAEEKRLQKERAK 756
>SPBC582.10c |||ATP-dependent DNA helicase Rhp16b
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 830
Score = 31.5 bits (68), Expect = 0.033
Identities = 17/67 (25%), Positives = 36/67 (53%)
Frame = +2
Query: 23 GEDGAGRKKTATAEERRLQPPKKEDCNLPKKEDSNRRRKKTAIAEERRLQSPKKEDCNRR 202
G + AG++ +T+ R PK ED ++PK+ ++ +KKT +S K+++ +
Sbjct: 24 GVNTAGKENESTSLPRL---PKSEDESIPKQSIKSKNKKKTQHFLSDAFESLKRQEIDTN 80
Query: 203 RKKTAIA 223
K+ ++
Sbjct: 81 EKEVIVS 87
>SPAC22E12.10c |etp1|cox15|mitochondrial type I [2Fe-2S] ferredoxin
Etp1/ cytochrome oxidase cofactor Cox15,
fusion|Schizosaccharomyces pombe|chr 1|||Manual
Length = 631
Score = 31.1 bits (67), Expect = 0.043
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -2
Query: 297 SSAIAVFFLRRLQSSFFGDCSFHSSAIAVFFLRRLQSS 184
SS + L R ++ F DC F+ ++ FF RRL +S
Sbjct: 41 SSVLNEINLSRTKNLFLNDCKFNKNSFEKFFARRLSNS 78
Score = 27.9 bits (59), Expect = 0.40
Identities = 18/51 (35%), Positives = 24/51 (47%)
Frame = -1
Query: 313 RLQSSFFGDCGLLSSAIAVFFLRRLQFSFFGDCSFLSSAIAIFFLRRLQSS 161
R+ SF G SS + L R + F DC F ++ FF RRL +S
Sbjct: 33 RMSRSFSG-----SSVLNEINLSRTKNLFLNDCKFNKNSFEKFFARRLSNS 78
Score = 27.5 bits (58), Expect = 0.53
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = -2
Query: 267 RLQSSFFGDCSFHSSAIAVFFLRRLQSSFFGDCSLLSSAIAVFFLRRLESS 115
R+ SF G SS + L R ++ F DC ++ FF RRL +S
Sbjct: 33 RMSRSFSG-----SSVLNEINLSRTKNLFLNDCKFNKNSFEKFFARRLSNS 78
Score = 24.6 bits (51), Expect = 3.7
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = -3
Query: 320 SSAIAVVFLRRLRSSFFGDCSLLSSAIAVFILRRLQFS 207
SS + + L R ++ F DC ++ F RRL S
Sbjct: 41 SSVLNEINLSRTKNLFLNDCKFNKNSFEKFFARRLSNS 78
>SPBC17D11.05 |tif32||translation initiation factor
eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 932
Score = 30.7 bits (66), Expect = 0.057
Identities = 24/97 (24%), Positives = 43/97 (44%), Gaps = 8/97 (8%)
Frame = +1
Query: 49 DCNRRRKKTATAEERRLQPAEERRLQSPK--KEDCNRR------RKKTAIAEERRLQSPK 204
D R R++ E++ + E ++ + +E+ NR +K AI E R
Sbjct: 771 DAERERQRKEIFEQKLAEAIREAEEEAARAAEEEANRELHEQEEAQKRAIEERTRAAREA 830
Query: 205 KENCNRRRMKTAIAEERRLQSPKKEDRNRRRKTTAIA 315
KE +R M + +RR+Q + E+ +R+ A A
Sbjct: 831 KER-EQREMAEKLERQRRIQQERDEEISRKLAEKAAA 866
Score = 28.7 bits (61), Expect = 0.23
Identities = 16/73 (21%), Positives = 35/73 (47%)
Frame = +1
Query: 43 KEDCNRRRKKTATAEERRLQPAEERRLQSPKKEDCNRRRKKTAIAEERRLQSPKKENCNR 222
+E+ NR + A++R + EER + + ++ +R + +RR+Q + E +R
Sbjct: 802 EEEANRELHEQEEAQKRAI---EERTRAAREAKEREQREMAEKLERQRRIQQERDEEISR 858
Query: 223 RRMKTAIAEERRL 261
+ + A A +
Sbjct: 859 KLAEKAAARRANI 871
Score = 23.4 bits (48), Expect = 8.6
Identities = 14/63 (22%), Positives = 27/63 (42%)
Frame = +1
Query: 4 LHEFGTRGRRSWKKEDCNRRRKKTATAEERRLQPAEERRLQSPKKEDCNRRRKKTAIAEE 183
LHE +R+ ++ R K E + +RR+Q + E+ +R+ + A A
Sbjct: 809 LHEQEEAQKRAIEERTRAAREAKEREQREMAEKLERQRRIQQERDEEISRKLAEKAAARR 868
Query: 184 RRL 192
+
Sbjct: 869 ANI 871
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 29.9 bits (64), Expect = 0.100
Identities = 22/102 (21%), Positives = 40/102 (39%), Gaps = 3/102 (2%)
Frame = +1
Query: 28 RRSWKKEDCNRRRKKTATAEERRLQPAEE---RRLQSPKKEDCNRRRKKTAIAEERRLQS 198
R++ +K AEE+ + AEE R + K + + K+ A +R
Sbjct: 547 RKAEEKARLEAEENAKREAEEQAKREAEEKAKREAEEKAKREAEEKAKREAEENAKREAE 606
Query: 199 PKKENCNRRRMKTAIAEERRLQSPKKEDRNRRRKTTAIAEER 324
K + + K E+ + ++ +K R K AEE+
Sbjct: 607 EKAKREAEEKAKREAEEKAKREAEEKAKREAEEKAKREAEEK 648
Score = 29.5 bits (63), Expect = 0.13
Identities = 22/102 (21%), Positives = 40/102 (39%), Gaps = 3/102 (2%)
Frame = +1
Query: 28 RRSWKKEDCNRRRKKTATAEERRLQPAEE---RRLQSPKKEDCNRRRKKTAIAEERRLQS 198
R + +K K AEE+ + AEE R + K + + K+ A + +R
Sbjct: 571 REAEEKAKREAEEKAKREAEEKAKREAEENAKREAEEKAKREAEEKAKREAEEKAKREAE 630
Query: 199 PKKENCNRRRMKTAIAEERRLQSPKKEDRNRRRKTTAIAEER 324
K + + K E+ + ++ +K R AEE+
Sbjct: 631 EKAKREAEEKAKREAEEKAKREAEEKAKREAEENAKREAEEK 672
Score = 27.1 bits (57), Expect = 0.70
Identities = 19/92 (20%), Positives = 39/92 (42%)
Frame = +2
Query: 26 EDGAGRKKTATAEERRLQPPKKEDCNLPKKEDSNRRRKKTAIAEERRLQSPKKEDCNRRR 205
E+ A R+ A+ + K+E K+E + +++ +R + K + +
Sbjct: 558 EENAKREAEEQAKREAEEKAKREAEEKAKREAEEKAKREAEENAKREAEEKAKREAEEKA 617
Query: 206 KKTAIAEE*KLQSPKKEDCNRRRKKTAIAEER 301
K+ A E+ K ++ +K K AEE+
Sbjct: 618 KREA-EEKAKREAEEKAKREAEEKAKREAEEK 648
Score = 27.1 bits (57), Expect = 0.70
Identities = 21/101 (20%), Positives = 39/101 (38%), Gaps = 3/101 (2%)
Frame = +1
Query: 28 RRSWKKEDCNRRRKKTATAEERRLQPAEERRLQSPKKEDCNRRRKKTAIAEERRLQSPKK 207
R + +K K AEE+ + AEE+ + +++ +K E + + +
Sbjct: 603 REAEEKAKREAEEKAKREAEEKAKREAEEKAKREAEEKAKREAEEKAKREAEEKAKREAE 662
Query: 208 ENCNR---RRMKTAIAEERRLQSPKKEDRNRRRKTTAIAEE 321
EN R + K E + ++ +K R AEE
Sbjct: 663 ENAKREAEEKAKREAEENAKREAEEKVKRETEENAKRKAEE 703
Score = 25.8 bits (54), Expect = 1.6
Identities = 21/90 (23%), Positives = 36/90 (40%), Gaps = 1/90 (1%)
Frame = +1
Query: 28 RRSWKKEDCNRRRKKTATAEERRLQPAEERRLQSPKKEDCNRRRKKTAIAE-ERRLQSPK 204
R + +K K AEE+ + AEE + + +E R ++ A E E + +
Sbjct: 619 REAEEKAKREAEEKAKREAEEKAKREAEE-KAKREAEEKAKREAEENAKREAEEKAKREA 677
Query: 205 KENCNRRRMKTAIAEERRLQSPKKEDRNRR 294
+EN R + E K E+ +R
Sbjct: 678 EENAKREAEEKVKRETEENAKRKAEEEGKR 707
Score = 25.0 bits (52), Expect = 2.8
Identities = 18/90 (20%), Positives = 38/90 (42%)
Frame = +2
Query: 26 EDGAGRKKTATAEERRLQPPKKEDCNLPKKEDSNRRRKKTAIAEERRLQSPKKEDCNRRR 205
E+ A R+ A+ + K+E K+E + +++ +R + K + +
Sbjct: 590 EEKAKREAEENAKREAEEKAKREAEEKAKREAEEKAKREAEEKAKREAEEKAKREAEEKA 649
Query: 206 KKTAIAEE*KLQSPKKEDCNRRRKKTAIAE 295
K+ A E K + +E+ R ++ A E
Sbjct: 650 KREA---EEKAKREAEENAKREAEEKAKRE 676
Score = 25.0 bits (52), Expect = 2.8
Identities = 18/92 (19%), Positives = 37/92 (40%)
Frame = +2
Query: 26 EDGAGRKKTATAEERRLQPPKKEDCNLPKKEDSNRRRKKTAIAEERRLQSPKKEDCNRRR 205
E+ A R+ A+ + K+E K+E + +++ +R + K + +
Sbjct: 598 EENAKREAEEKAKREAEEKAKREAEEKAKREAEEKAKREAEEKAKREAEEKAKREAEEKA 657
Query: 206 KKTAIAEE*KLQSPKKEDCNRRRKKTAIAEER 301
K+ A E K ++ +K AEE+
Sbjct: 658 KREA-EENAKREAEEKAKREAEENAKREAEEK 688
Score = 24.6 bits (51), Expect = 3.7
Identities = 20/94 (21%), Positives = 37/94 (39%)
Frame = +2
Query: 20 RGEDGAGRKKTATAEERRLQPPKKEDCNLPKKEDSNRRRKKTAIAEERRLQSPKKEDCNR 199
+ E A RK A + K+E K+E + +++ +R + K +
Sbjct: 540 KAEAEAKRKAEEKARLEAEENAKREAEEQAKREAEEKAKREAEEKAKREAEEKAKREAEE 599
Query: 200 RRKKTAIAEE*KLQSPKKEDCNRRRKKTAIAEER 301
K+ A E+ K ++ +K K AEE+
Sbjct: 600 NAKREA-EEKAKREAEEKAKREAEEKAKREAEEK 632
Score = 24.6 bits (51), Expect = 3.7
Identities = 18/94 (19%), Positives = 39/94 (41%)
Frame = +2
Query: 20 RGEDGAGRKKTATAEERRLQPPKKEDCNLPKKEDSNRRRKKTAIAEERRLQSPKKEDCNR 199
+ E+ A + A+ + K+E K+E + +++ +R + K +
Sbjct: 548 KAEEKARLEAEENAKREAEEQAKREAEEKAKREAEEKAKREAEEKAKREAEENAKREAEE 607
Query: 200 RRKKTAIAEE*KLQSPKKEDCNRRRKKTAIAEER 301
+ K+ A E+ K ++ +K K AEE+
Sbjct: 608 KAKREA-EEKAKREAEEKAKREAEEKAKREAEEK 640
Score = 23.4 bits (48), Expect = 8.6
Identities = 19/95 (20%), Positives = 40/95 (42%), Gaps = 2/95 (2%)
Frame = +2
Query: 26 EDGAGRKKTATAEERRLQPPKKEDCNLPKKEDSNRRRKKTAIAEERRLQSPKKEDCNRRR 205
E+ A R+ A+ + K+E K+E + +++ +R + K + +
Sbjct: 614 EEKAKREAEEKAKREAEEKAKREAEEKAKREAEEKAKREAEEKAKREAEENAKREAEEKA 673
Query: 206 KKTAIAEE*KLQSPK--KEDCNRRRKKTAIAEERR 304
K+ A E K ++ + K + K+ A E +R
Sbjct: 674 KREA-EENAKREAEEKVKRETEENAKRKAEEEGKR 707
>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 29.9 bits (64), Expect = 0.100
Identities = 27/111 (24%), Positives = 51/111 (45%), Gaps = 8/111 (7%)
Frame = +1
Query: 16 GTRGRRSWK--KEDCNRRRKKTATAEERRLQPAEERRLQSPKK------EDCNRRRKKTA 171
G R +R + E ++ + A+E R++ E RL+ K+ E R ++K A
Sbjct: 61 GNRKKRIYNGSAEAGKEKKLQKQRAQEERIRQKEAERLKREKERQQREQEKKLREQEKIA 120
Query: 172 IAEERRLQSPKKENCNRRRMKTAIAEERRLQSPKKEDRNRRRKTTAIAEER 324
+ + L+ +KE + + EER + +KE+ R R+ + +ER
Sbjct: 121 AKKMKELEKLEKERIRLQEQQRR-KEERDQKLREKEEAQRLRQEQILNKER 170
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 29.5 bits (63), Expect = 0.13
Identities = 16/84 (19%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Frame = +2
Query: 38 GRKKTATAEERRLQPPKKEDCNLPKKEDSNRRRKKTAIAEERRLQSPKKEDCNR-RRKKT 214
G+K E PP+ + + K++ R +K+ +++ Q+ KK +
Sbjct: 155 GKKAQNNNESEAAAPPEIPEVRVKTKKEKEREKKEREKLRKKQQQAKKKGSTGEDTLASS 214
Query: 215 AIAEE*KLQSPKKEDCNRRRKKTA 286
++ E + +P + D + + K+ A
Sbjct: 215 EVSSEVDISTPAENDSSAKGKQAA 238
Score = 29.5 bits (63), Expect = 0.13
Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Frame = +1
Query: 28 RRSWKKEDCNRRRKKTATAEE-RRLQPAEERRLQSP--KKEDCNRRRKKTAIAEERRLQS 198
+R+ ++E+ R ++ AEE +RL EE R + KK++ R++K+ A+ + L
Sbjct: 257 KRAREEEEQRIREEEARIAEEEKRLAEVEEARKEEARLKKKEKERKKKEEMKAQGKYLSK 316
Query: 199 PKKE 210
+KE
Sbjct: 317 KQKE 320
Score = 26.6 bits (56), Expect = 0.93
Identities = 22/94 (23%), Positives = 49/94 (52%), Gaps = 4/94 (4%)
Frame = +1
Query: 55 NRRRKKTATAEERRLQPAEERRLQSPKKEDCNRRRKKTAIAEE-RRLQSPKKENCNRRRM 231
++R+ TA ++ L EE+R + ++E+ R ++ IAEE +RL ++ R+
Sbjct: 240 SKRKGPNVTALQKML---EEKRAR--EEEEQRIREEEARIAEEEKRLAEVEEARKEEARL 294
Query: 232 KTAIAEERRLQSPKKEDR---NRRRKTTAIAEER 324
K E ++ + K + + ++++ A+A+ R
Sbjct: 295 KKKEKERKKKEEMKAQGKYLSKKQKEQQALAQRR 328
Score = 26.2 bits (55), Expect = 1.2
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Frame = +2
Query: 62 EERRL---QPPKKEDCNLPKKEDSNRRRKKTAIAEERRLQSPKKE 187
EE+RL + +KE+ L KKE R++K+ A+ + L +KE
Sbjct: 277 EEKRLAEVEEARKEEARLKKKE-KERKKKEEMKAQGKYLSKKQKE 320
>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 29.1 bits (62), Expect = 0.17
Identities = 20/54 (37%), Positives = 33/54 (61%)
Frame = +2
Query: 116 EDSNRRRKKTAIAEERRLQSPKKEDCNRRRKKTAIAEE*KLQSPKKEDCNRRRK 277
EDS ++RK +E+ ++ KKE+ +RRKK A E+ K + KKE +++K
Sbjct: 423 EDS-KKRKSVESSEKDEDEAAKKEE--KRRKKEAKKEK-KEKKEKKEKKEKKKK 472
Score = 27.1 bits (57), Expect = 0.70
Identities = 14/51 (27%), Positives = 32/51 (62%)
Frame = +3
Query: 171 NRRRKKIAIAEERKLQSPKNENCNRRRKKTAIAEERRPQSPKKDDCNRRRK 323
+++RK + +E+ + ++ K E +RRKK A +E++ + KK+ +++K
Sbjct: 425 SKKRKSVESSEKDEDEAAKKE--EKRRKKEA-KKEKKEKKEKKEKKEKKKK 472
Score = 25.8 bits (54), Expect = 1.6
Identities = 14/45 (31%), Positives = 26/45 (57%)
Frame = +2
Query: 11 NSARGEDGAGRKKTATAEERRLQPPKKEDCNLPKKEDSNRRRKKT 145
+S + ED A +K+ E+RR + KKE +K++ ++KK+
Sbjct: 433 SSEKDEDEAAKKE----EKRRKKEAKKEKKEKKEKKEKKEKKKKS 473
Score = 25.4 bits (53), Expect = 2.1
Identities = 15/44 (34%), Positives = 29/44 (65%)
Frame = +2
Query: 194 NRRRKKTAIAEE*KLQSPKKEDCNRRRKKTAIAEERRLQSPKKE 325
+++RK +E+ + ++ KKE+ +RRKK A +E++ + KKE
Sbjct: 425 SKKRKSVESSEKDEDEAAKKEE--KRRKKEA-KKEKKEKKEKKE 465
Score = 25.0 bits (52), Expect = 2.8
Identities = 11/48 (22%), Positives = 26/48 (54%)
Frame = +1
Query: 148 NRRRKKTAIAEERRLQSPKKENCNRRRMKTAIAEERRLQSPKKEDRNR 291
+++RK +E+ ++ KKE R++ +E++ + KKE + +
Sbjct: 425 SKKRKSVESSEKDEDEAAKKEEKRRKKEAKKEKKEKKEKKEKKEKKKK 472
Score = 25.0 bits (52), Expect = 2.8
Identities = 14/49 (28%), Positives = 29/49 (59%)
Frame = +2
Query: 62 EERRLQPPKKEDCNLPKKEDSNRRRKKTAIAEERRLQSPKKEDCNRRRK 208
+ + ++ +K++ KKE+ RRKK A +E++ + KKE +++K
Sbjct: 427 KRKSVESSEKDEDEAAKKEEK--RRKKEA-KKEKKEKKEKKEKKEKKKK 472
Score = 23.8 bits (49), Expect = 6.5
Identities = 13/48 (27%), Positives = 30/48 (62%)
Frame = +1
Query: 85 EERRLQPAEERRLQSPKKEDCNRRRKKTAIAEERRLQSPKKENCNRRR 228
+ + ++ +E+ ++ KKE+ +RRKK A +E++ + KKE +++
Sbjct: 427 KRKSVESSEKDEDEAAKKEE--KRRKKEA-KKEKKEKKEKKEKKEKKK 471
>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
complex subunit Tpr1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1039
Score = 28.7 bits (61), Expect = 0.23
Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Frame = +1
Query: 40 KKEDCNRRRKKTATAEERRLQPAEERRLQSPKKEDCNRRRKKTAIAEERRLQSPK-KENC 216
K ED +R+K + RRL AEE L K+E + +++ +E L+ K ++
Sbjct: 870 KLEDARIQREKE---KARRL--AEEEALLKEKQERERQLQEERQKMQEEVLEWRKSQQKA 924
Query: 217 NRRRMKTAIAEERRLQSPKKEDRNRRR 297
+ M + EE++ KK+DR +R+
Sbjct: 925 SEDDMSLSDDEEKQSGKKKKKDRKKRK 951
Score = 28.3 bits (60), Expect = 0.30
Identities = 21/98 (21%), Positives = 44/98 (44%), Gaps = 9/98 (9%)
Frame = +1
Query: 58 RRRKKTATAEERRLQPAEERRLQSPKKEDCNRRRKK-------TAIAE--ERRLQSPKKE 210
R+ ++ A+ ++ L EE++ KK+D +R+ K + ++E E L + +
Sbjct: 918 RKSQQKASEDDMSLSDDEEKQSGKKKKKDRKKRKSKSKQESSDSGVSEDDEIPLSDARNK 977
Query: 211 NCNRRRMKTAIAEERRLQSPKKEDRNRRRKTTAIAEER 324
RR + I+EE + N+ + + EE+
Sbjct: 978 TKKRRVNRRVISEEYTFDQDSDAEGNQEEEVSRTIEEK 1015
>SPAC1250.02 |mug95||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 178
Score = 28.7 bits (61), Expect = 0.23
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +1
Query: 97 LQPAEERRLQSPKKEDCNRRRKKTAIAEERRLQS 198
L+P EE+ L KEDC +K + + LQS
Sbjct: 62 LKPNEEKELPKDIKEDCKTVEEKEKVVPRKPLQS 95
Score = 24.2 bits (50), Expect = 4.9
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +3
Query: 132 EERRLQSPKKEDCNRRRKKIAIAEERKLQS 221
EE+ L KEDC +K + + LQS
Sbjct: 66 EEKELPKDIKEDCKTVEEKEKVVPRKPLQS 95
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 28.3 bits (60), Expect = 0.30
Identities = 16/72 (22%), Positives = 36/72 (50%)
Frame = +1
Query: 10 EFGTRGRRSWKKEDCNRRRKKTATAEERRLQPAEERRLQSPKKEDCNRRRKKTAIAEERR 189
E +R R+W + + +++ K + A++++ +++++ KE+ R KKT
Sbjct: 686 EIRSRPARTWFQSEKDKQASKASEAKDKKSLAKRKKQME---KEEVPRAYKKTKNDRLSN 742
Query: 190 LQSPKKENCNRR 225
+S KK R+
Sbjct: 743 KKSTKKSKSKRK 754
>SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 284
Score = 28.3 bits (60), Expect = 0.30
Identities = 20/76 (26%), Positives = 39/76 (51%)
Frame = +2
Query: 41 RKKTATAEERRLQPPKKEDCNLPKKEDSNRRRKKTAIAEERRLQSPKKEDCNRRRKKTAI 220
+KKT+T L P K E KK++ ++++ K + +++R+ S KE+ +++ K
Sbjct: 178 KKKTSTGSA--LDPKKLEKITKKKKKE-HKKKDKESSSKKRKSGSSDKEEKKKKKIKLKD 234
Query: 221 AEE*KLQSPKKEDCNR 268
E K ++ NR
Sbjct: 235 KPESTSSVEKVKEGNR 250
>SPAC12G12.11c |||DUF544 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 27.9 bits (59), Expect = 0.40
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +1
Query: 40 KKEDCNRRRKKTATAEERRLQPAEER-RLQSPKKEDCNRRRKKTAIAEERRLQSPKKENC 216
+KE+ +R K +R + EER + ++PKK RR K+ + R+ + ENC
Sbjct: 307 RKEEKKKRAKDDEQYAKRLAKEEEERGKKETPKKASNTPRRNKSNTQKSRK----QSENC 362
>SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 27.1 bits (57), Expect = 0.70
Identities = 18/63 (28%), Positives = 27/63 (42%)
Frame = +1
Query: 37 WKKEDCNRRRKKTATAEERRLQPAEERRLQSPKKEDCNRRRKKTAIAEERRLQSPKKENC 216
+K + N +K A AE L + + K + NRR + E R+ S +K N
Sbjct: 447 FKPLELNVVGEKKANAEVDSLPSENVQESEDDKAFEENRRLRNLGSVEYIRIMSSEKSNA 506
Query: 217 NRR 225
N R
Sbjct: 507 NSR 509
>SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 508
Score = 27.1 bits (57), Expect = 0.70
Identities = 19/86 (22%), Positives = 37/86 (43%), Gaps = 3/86 (3%)
Frame = +2
Query: 29 DGAGRKKTATAEERRLQPPKKEDCNLP---KKEDSNRRRKKTAIAEERRLQSPKKEDCNR 199
+G TAT + +ED + +K+ + K A E + + +K+D
Sbjct: 422 NGTSAYSTATDAVTKDAEESQEDVEMDIVIEKKKKKSSKLKEADGESSKKEKKEKKDKKH 481
Query: 200 RRKKTAIAEE*KLQSPKKEDCNRRRK 277
++ K E +SPKK+ +++ K
Sbjct: 482 KKSKRKSEESEDGESPKKKKKSKKSK 507
Score = 25.8 bits (54), Expect = 1.6
Identities = 19/80 (23%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
Frame = +1
Query: 76 ATAEERRLQPAEERRLQSPKKEDCNRRRKKTAIAEERRLQSPKKENCNR-----RRMKTA 240
+TA + + AEE + +++KK++ +E +S KKE + ++ K
Sbjct: 428 STATDAVTKDAEESQEDVEMDIVIEKKKKKSSKLKEADGESSKKEKKEKKDKKHKKSKRK 487
Query: 241 IAEERRLQSPKKEDRNRRRK 300
E +SPKK+ ++++ K
Sbjct: 488 SEESEDGESPKKKKKSKKSK 507
Score = 23.4 bits (48), Expect = 8.6
Identities = 13/49 (26%), Positives = 23/49 (46%)
Frame = +2
Query: 179 KKEDCNRRRKKTAIAEE*KLQSPKKEDCNRRRKKTAIAEERRLQSPKKE 325
+K+ + K A E K + +K+D ++ K E +SPKK+
Sbjct: 452 EKKKKKSSKLKEADGESSKKEKKEKKDKKHKKSKRKSEESEDGESPKKK 500
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 27.1 bits (57), Expect = 0.70
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +1
Query: 28 RRSWKKEDCNRRRKKTATAEERRLQPAEERRLQSPKKEDC 147
+R K+ N+RR+K E L PA + P KE+C
Sbjct: 24 KRKRKERGQNKRREKIHVKENNALCPAISIGNECPYKENC 63
>SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 436
Score = 26.6 bits (56), Expect = 0.93
Identities = 20/98 (20%), Positives = 45/98 (45%)
Frame = +2
Query: 20 RGEDGAGRKKTATAEERRLQPPKKEDCNLPKKEDSNRRRKKTAIAEERRLQSPKKEDCNR 199
+GE +KKT+T +E LQ K+ L +++ + K E + Q ++
Sbjct: 155 QGESQTDKKKTSTVQEEELQNAGKK---LETVQENPQAYSKVTQQEPQAGQKAVPQEPQA 211
Query: 200 RRKKTAIAEE*KLQSPKKEDCNRRRKKTAIAEERRLQS 313
+++T+ +E ++ ++++ KT E L++
Sbjct: 212 NQQETSSNQEESSFDRQETQDDKQKPKTTQQEHYNLRN 249
>SPCC1393.02c |||non-specific DNA binding protein Spt2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 406
Score = 26.6 bits (56), Expect = 0.93
Identities = 22/84 (26%), Positives = 39/84 (46%)
Frame = +1
Query: 46 EDCNRRRKKTATAEERRLQPAEERRLQSPKKEDCNRRRKKTAIAEERRLQSPKKENCNRR 225
E+ NR+RK E R+ E+RR Q+ K+ A + + + P +
Sbjct: 42 EERNRQRKLQRERELRQKYEEEQRRQQA-------MEAKRIAASTRQTSERPPLSAEEAK 94
Query: 226 RMKTAIAEERRLQSPKKEDRNRRR 297
R++ + E+ RL+S K E + + R
Sbjct: 95 RIR-EVKEKDRLESKKNERQGKPR 117
>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1098
Score = 26.2 bits (55), Expect = 1.2
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = +3
Query: 156 KKEDCNRRRKKIAIA-EERKLQSPKNENCNRRRKKTAIAEERRPQSPKKDD 305
K+E N KK+ + EE + KN+ C + R+ + E KDD
Sbjct: 707 KQESINGEEKKLIVGVEEDAMNEDKNKPCKKIREFVQLLLENPNYPLPKDD 757
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 26.2 bits (55), Expect = 1.2
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +2
Query: 74 LQPPKKEDCNLPKKEDSNRRRKKTAIAEERRLQSPKKEDCNRRRKKTAI 220
L P KE KK R+R T + +R+ + KKE + +K+ +I
Sbjct: 421 LPKPSKEMKKKLKKSPPKRKRITTRASYDRQKEQRKKEYIKKVKKEASI 469
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 26.2 bits (55), Expect = 1.2
Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = +2
Query: 29 DGAGRKKTATAEERRLQPPKKEDCNLPKKEDSNRRRKKTAIAEERR-LQSPKKEDCNRRR 205
D GR+ T A +R + + + ++ED ++ A ++RR S ++ D R R
Sbjct: 1555 DADGRRSTHYASNKRPRSSDSQSPSNLREEDERENSRRRARQDDRRDRDSRQQRDRPRDR 1614
Query: 206 KKTAIAEE 229
+ EE
Sbjct: 1615 TSRSAREE 1622
Score = 23.8 bits (49), Expect = 6.5
Identities = 15/66 (22%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = +1
Query: 64 RKKTATAEERRLQPAEERRLQSPKKEDCNRRRKKTAIAEERR-LQSPKKENCNRRRMKTA 240
R+ T A +R + ++ + + ++ED ++ A ++RR S ++ + R R +
Sbjct: 1559 RRSTHYASNKRPRSSDSQSPSNLREEDERENSRRRARQDDRRDRDSRQQRDRPRDRTSRS 1618
Query: 241 IAEERR 258
EE+R
Sbjct: 1619 AREEKR 1624
>SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 413
Score = 26.2 bits (55), Expect = 1.2
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -1
Query: 289 DCGLLSSAIAVFFLRRLQFSFFGDCSFLSS 200
DC + S + FF+ + QF F D + L+S
Sbjct: 368 DCFISSESFQSFFILQKQFQLFQDLALLTS 397
Score = 24.6 bits (51), Expect = 3.7
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -2
Query: 243 DCSFHSSAIAVFFLRRLQSSFFGDCSLLSS 154
DC S + FF+ + Q F D +LL+S
Sbjct: 368 DCFISSESFQSFFILQKQFQLFQDLALLTS 397
Score = 24.2 bits (50), Expect = 4.9
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -1
Query: 220 DCSFLSSAIAIFFLRRLQSSFFGDCSLLSS 131
DC S + FF+ + Q F D +LL+S
Sbjct: 368 DCFISSESFQSFFILQKQFQLFQDLALLTS 397
>SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr
2|||Manual
Length = 479
Score = 25.4 bits (53), Expect = 2.1
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = +3
Query: 150 SPKKEDCNRRRKKIAIAEERKLQSPKNENCNRRRKKTAIAEERRPQSPKKD 302
SP + + + RR ++ ++P+ + N+RR A++R QSP D
Sbjct: 89 SPAESESSERRHTPQTNSQKSQKTPRLSS-NKRRTLKNDAKQRNSQSPGTD 138
Score = 25.4 bits (53), Expect = 2.1
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = +1
Query: 127 SPKKEDCNRRRKKTAIAEERRLQSPKKENCNRRRMKTAIAEERRLQSP 270
SP + + + RR ++ ++P+ + RR +K A++R QSP
Sbjct: 89 SPAESESSERRHTPQTNSQKSQKTPRLSSNKRRTLKND-AKQRNSQSP 135
Score = 24.2 bits (50), Expect = 4.9
Identities = 14/63 (22%), Positives = 27/63 (42%)
Frame = +1
Query: 70 KTATAEERRLQPAEERRLQSPKKEDCNRRRKKTAIAEERRLQSPKKENCNRRRMKTAIAE 249
++ ++E R ++ Q + N+RR A++R QSP + + +I
Sbjct: 92 ESESSERRHTPQTNSQKSQKTPRLSSNKRRTLKNDAKQRNSQSPGTDTSDANLTIQSIEA 151
Query: 250 ERR 258
RR
Sbjct: 152 PRR 154
>SPBP8B7.10c |||U3 snoRNP-associated protein Utp16
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 346
Score = 25.4 bits (53), Expect = 2.1
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +1
Query: 226 RMKTAIAEERRLQSPKKEDRNRRR 297
R++ A E+RRLQ+ + +RN +R
Sbjct: 213 RLRKAEREKRRLQNERNRERNAQR 236
>SPCC126.04c |||SAGA complex subunit Sgf73 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 344
Score = 25.4 bits (53), Expect = 2.1
Identities = 13/49 (26%), Positives = 21/49 (42%)
Frame = +2
Query: 2 GCMNSARGEDGAGRKKTATAEERRLQPPKKEDCNLPKKEDSNRRRKKTA 148
G ++A+G G K + ++ PPK+ KK + KK A
Sbjct: 137 GVKSTAKGSAGNHEKNSVNGQKNPEMPPKRRKTEENKKPTKSALPKKEA 185
>SPAC1952.17c ||SPAC890.01c|GTPase activating
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 619
Score = 25.4 bits (53), Expect = 2.1
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +3
Query: 126 IAEERRLQSPKKEDCNRRRKKIAIAEERKLQSPKN 230
I EE +S ++ED R+KI I +RK+ +N
Sbjct: 585 ITEEE--ESSEEEDLTTSRRKIGITSKRKVSVKRN 617
>SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 324
Score = 25.0 bits (52), Expect = 2.8
Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 2/89 (2%)
Frame = +2
Query: 47 KTATAEERRLQPPKKEDCNLPKKEDSNRRRKKTAIAEERRLQSPKKEDCNRRRKKTAIAE 226
K TAE+ +Q N P++ +R R+K + ERR KK ++E
Sbjct: 110 KITTAEKSSVQSSLNTKENTPQQPKKSRNRQKERL--ERRKAEMKK-----------MSE 156
Query: 227 E*KLQSPKKEDCNRRRKK--TAIAEERRL 307
+ +L+S K D KK + I EE L
Sbjct: 157 QAELESEKMADLKNEEKKKFSKILEEAGL 185
>SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 272
Score = 25.0 bits (52), Expect = 2.8
Identities = 19/66 (28%), Positives = 33/66 (50%)
Frame = +2
Query: 59 AEERRLQPPKKEDCNLPKKEDSNRRRKKTAIAEERRLQSPKKEDCNRRRKKTAIAEE*KL 238
A+E+R++ P +D LPK D + ++K+ E Q + E + + + +E L
Sbjct: 107 AKEKRIKSPDVKDFKLPK--DILKVKEKSEKPLETS-QKVEIETVETKPGEPEVKQETNL 163
Query: 239 QSPKKE 256
Q KKE
Sbjct: 164 QKEKKE 169
>SPAC144.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 112
Score = 24.6 bits (51), Expect = 3.7
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 9/76 (11%)
Frame = +2
Query: 11 NSARGEDGAGRKKTATAEERRLQPPK---KEDCNLPKKEDSN----RRRKKTAIAEER-- 163
N EDG R+K +ER +P K ++ KK++ N ++ + +EE+
Sbjct: 19 NPNANEDGYFRRKRLAKKERPFEPKKLVQQQQRLKEKKKNENIIYLKKTMRVTPSEEKIH 78
Query: 164 RLQSPKKEDCNRRRKK 211
+ + K+E R+RK+
Sbjct: 79 EMINQKRETKKRKRKQ 94
>SPCC1827.04 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 600
Score = 24.6 bits (51), Expect = 3.7
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = +1
Query: 76 ATAEERRLQPAEERRLQSPKKEDCNRRRKKTAIAEERRLQSPKKEN 213
A EER+ Q E+ ++ + ++ R++KK A E + + K N
Sbjct: 360 AQEEERKRQAEIEKEIRQSRLQEEERKKKKLAKYTEVIISNLKASN 405
>SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 316
Score = 24.6 bits (51), Expect = 3.7
Identities = 19/94 (20%), Positives = 37/94 (39%)
Frame = +2
Query: 41 RKKTATAEERRLQPPKKEDCNLPKKEDSNRRRKKTAIAEERRLQSPKKEDCNRRRKKTAI 220
+K A +R LQPPK+ + E ++ KK + R S + +
Sbjct: 97 QKNRAANLQRTLQPPKRPTPS-AASEVPKKKYKKIKVDPSARRTSSRMHTVLMAQSTETR 155
Query: 221 AEE*KLQSPKKEDCNRRRKKTAIAEERRLQSPKK 322
+E K + + R+K + +++R + K
Sbjct: 156 LQEAKPRRKYTVSASANRQKGTMTQQQRFEEAAK 189
>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 24.6 bits (51), Expect = 3.7
Identities = 16/62 (25%), Positives = 34/62 (54%)
Frame = +1
Query: 28 RRSWKKEDCNRRRKKTATAEERRLQPAEERRLQSPKKEDCNRRRKKTAIAEERRLQSPKK 207
R+ E + +++ EE++ + E+RRL K+E + +RK+ A E+R++ K
Sbjct: 137 RKKELMEKEKKEKERIRLIEEQKHKENEQRRL---KQEQIDAKRKEEE-AREKRMKETFK 192
Query: 208 EN 213
++
Sbjct: 193 DD 194
>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 732
Score = 24.6 bits (51), Expect = 3.7
Identities = 13/46 (28%), Positives = 19/46 (41%)
Frame = +3
Query: 171 NRRRKKIAIAEERKLQSPKNENCNRRRKKTAIAEERRPQSPKKDDC 308
N K+ A E+K N+ NR + K R ++PK C
Sbjct: 7 NLNNKEHNRASEKKNSRTHNKKTNRNQSKEKPVSSRSVETPKNAVC 52
>SPAC589.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 168
Score = 24.6 bits (51), Expect = 3.7
Identities = 13/55 (23%), Positives = 26/55 (47%)
Frame = +1
Query: 136 KEDCNRRRKKTAIAEERRLQSPKKENCNRRRMKTAIAEERRLQSPKKEDRNRRRK 300
+ D + K + R L++ +EN + K+++ + S +K NR+RK
Sbjct: 14 ERDMKKNSKVVENSSARSLKNKTEENKTIDKHKSSVGPKEPKSSLEKPKANRKRK 68
>SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1205
Score = 24.6 bits (51), Expect = 3.7
Identities = 12/53 (22%), Positives = 25/53 (47%)
Frame = +3
Query: 135 ERRLQSPKKEDCNRRRKKIAIAEERKLQSPKNENCNRRRKKTAIAEERRPQSP 293
E +++P + K A +++K S K++ + RR+K + Q+P
Sbjct: 1105 EHAIRTPVSSFAKQTTNKHANLKQKKTHSSKSDKKSSRRRKNEKRRKLNEQNP 1157
>SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 24.2 bits (50), Expect = 4.9
Identities = 11/70 (15%), Positives = 38/70 (54%)
Frame = +1
Query: 67 KKTATAEERRLQPAEERRLQSPKKEDCNRRRKKTAIAEERRLQSPKKENCNRRRMKTAIA 246
+KT+ E + + +++++ + KK+ ++ K+ + ++ Q K++ ++ K++ +
Sbjct: 131 RKTSGKESSKREKSKKKKEKKEKKDKLKKKSKRLKL-DDSHTQKRKRKVRDKESKKSSKS 189
Query: 247 EERRLQSPKK 276
+++ KK
Sbjct: 190 GLKKVSGTKK 199
>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1019
Score = 24.2 bits (50), Expect = 4.9
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +1
Query: 46 EDCNRRRKKTATAEERRLQPAEERRLQSPKKEDCNRRRKKTAIAEERRLQ 195
E N++RK E+ Q EERR ++ + +K A A E R++
Sbjct: 754 ETGNKKRKYMYGDEDELEQEQEERRRRAQLDREFKSFAEKIAEASEGRIE 803
>SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit
Bdp1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 507
Score = 24.2 bits (50), Expect = 4.9
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +3
Query: 123 PIAE-ERRLQSPKKEDCNRRRKKIAIAEERKL 215
P+ E E+ LQ ++ RR+ I +AE+R+L
Sbjct: 442 PVEEMEKELQKIRENFEEERRRAIEVAEQRQL 473
>SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 601
Score = 24.2 bits (50), Expect = 4.9
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +2
Query: 71 RLQPPKKEDCNLPKKEDSNRRRKK 142
RL P D N PKKE+SN + K
Sbjct: 81 RLVPVVIIDNNTPKKEESNAEKLK 104
>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 497
Score = 24.2 bits (50), Expect = 4.9
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = +2
Query: 56 TAEERRLQPPKKE--DCNLPKKEDSNRRRKKTAIAEERRLQSPKKE 187
T E +P KKE D KKE S ++R +EE + KK+
Sbjct: 450 TVETISEKPSKKEKKDKKEKKKEKSKKKRSADDASEEVKKSKKKKK 495
Score = 23.4 bits (48), Expect = 8.6
Identities = 9/34 (26%), Positives = 19/34 (55%)
Frame = +2
Query: 110 KKEDSNRRRKKTAIAEERRLQSPKKEDCNRRRKK 211
KKE +++ KK ++++R E+ + +KK
Sbjct: 460 KKEKKDKKEKKKEKSKKKRSADDASEEVKKSKKK 493
>SPAC13G7.03 |||up-frameshift suppressor3 family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 278
Score = 24.2 bits (50), Expect = 4.9
Identities = 22/80 (27%), Positives = 36/80 (45%)
Frame = +2
Query: 44 KKTATAEERRLQPPKKEDCNLPKKEDSNRRRKKTAIAEERRLQSPKKEDCNRRRKKTAIA 223
KK A E+ + +P KK S + +KK +AE+ + K ++ KK++ A
Sbjct: 159 KKNAVVEKGKSKPSKK----------SVKAKKKLRLAEKPASNNSKAGKSSQESKKSSKA 208
Query: 224 EE*KLQSPKKEDCNRRRKKT 283
+ KED RKK+
Sbjct: 209 PAESAAAVIKEDKVSDRKKS 228
>SPCC777.09c |arg1||acetylornithine
aminotransferase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 441
Score = 24.2 bits (50), Expect = 4.9
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = -1
Query: 298 FFGDCGLLSSAIAVFFLRRLQFSFFGD 218
FF +CG ++ A+ F R+ F +G+
Sbjct: 140 FFANCGTEANETALKFARKAAFEKYGE 166
>SPBC3D6.09 |dpb4||DNA polymerase epsilon subunit Dpb4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 210
Score = 24.2 bits (50), Expect = 4.9
Identities = 12/47 (25%), Positives = 22/47 (46%)
Frame = +1
Query: 109 EERRLQSPKKEDCNRRRKKTAIAEERRLQSPKKENCNRRRMKTAIAE 249
+E+RL+ P D + R+K A + +K+ R+ IA+
Sbjct: 104 KEKRLKLPNVSDVDNRKKAKIDAHDTTPLDEEKDELEEERIAEDIAQ 150
Score = 24.2 bits (50), Expect = 4.9
Identities = 10/40 (25%), Positives = 20/40 (50%)
Frame = +3
Query: 201 EERKLQSPKNENCNRRRKKTAIAEERRPQSPKKDDCNRRR 320
+E++L+ P + + R+K A + P +KD+ R
Sbjct: 104 KEKRLKLPNVSDVDNRKKAKIDAHDTTPLDEEKDELEEER 143
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 24.2 bits (50), Expect = 4.9
Identities = 20/93 (21%), Positives = 36/93 (38%)
Frame = +2
Query: 20 RGEDGAGRKKTATAEERRLQPPKKEDCNLPKKEDSNRRRKKTAIAEERRLQSPKKEDCNR 199
R + T +A PK++ K D+ ++ +R QS ++ED
Sbjct: 249 RSSSNVNTEATPSATTTTSSKPKRDPFGGAKPVDNTSVLQRVEEKLAKRTQSFRREDNAN 308
Query: 200 RRKKTAIAEE*KLQSPKKEDCNRRRKKTAIAEE 298
R + T+ + P + + K AIAE+
Sbjct: 309 RERSTS-------RKPSADKAEKTDKTDAIAEK 334
>SPAC4F10.09c |||ribosome biogenesis protein Noc1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 860
Score = 23.8 bits (49), Expect = 6.5
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +3
Query: 123 PIAEERRLQSPKKEDCNRRRKKIAIAEERKLQSPKNENCNRR 248
P E++ LQS K +++RKK + L+ EN N R
Sbjct: 332 PTLEKKSLQSDSKNKKSQKRKK-----DEDLRKEAEENVNSR 368
>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 194
Score = 23.8 bits (49), Expect = 6.5
Identities = 17/79 (21%), Positives = 30/79 (37%)
Frame = +1
Query: 64 RKKTATAEERRLQPAEERRLQSPKKEDCNRRRKKTAIAEERRLQSPKKENCNRRRMKTAI 243
R T T ++ R R +S + +RR++K R S ++ R +
Sbjct: 107 RSSTNTEKDSRSIAHSTSRSRSTSPANRHRRKEKERTRSNHRHGSHRRHEPYRTHLSRHH 166
Query: 244 AEERRLQSPKKEDRNRRRK 300
K++DR RR+
Sbjct: 167 RHSTTNYHSKRDDRYERRR 185
>SPBC19C2.13c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 366
Score = 23.8 bits (49), Expect = 6.5
Identities = 9/31 (29%), Positives = 17/31 (54%)
Frame = +2
Query: 98 CNLPKKEDSNRRRKKTAIAEERRLQSPKKED 190
CNLP +ED+ +KT + ++ K ++
Sbjct: 310 CNLPMQEDAETWLQKTTVEHPDSVEGIKNQN 340
>SPAC26F1.02 |||pinin homologue|Schizosaccharomyces pombe|chr
1|||Manual
Length = 197
Score = 23.4 bits (48), Expect = 8.6
Identities = 17/82 (20%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Frame = +1
Query: 16 GTRGR--RSWKKEDCNRRRKKTATAEERRLQPAEERRLQSPKKEDCNRRRKKTAIAEERR 189
GT G+ + ++E + R+ K A EE+ + E+ + K+E ++ + E+R+
Sbjct: 82 GTLGKFQQESEREQKSARKVKRAELEEKLAKRREQELQELEKQEKIEAEILESRLQEQRK 141
Query: 190 LQSPKKENCNRRRMKTAIAEER 255
+ + E +R +K + ++
Sbjct: 142 VALDELE-LDRNDLKKVLDNKK 162
>SPCC63.05 |||TAP42 family protein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 323
Score = 23.4 bits (48), Expect = 8.6
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +2
Query: 86 KKEDCNLPKKEDSNRRRKKTAIAEERRLQ--SPKKEDCNRRRK 208
K+ L K EDS + ++T EER+ + S + D N R K
Sbjct: 181 KRAQAELMKSEDSPEKDEETLRREERKQKEGSSWRLDLNTRDK 223
>SPAC22E12.11c |set3||histone lysine methyltransferase
Set3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 23.4 bits (48), Expect = 8.6
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = +2
Query: 77 QPPKKEDCNLPK-KEDSNRRRKKTAIAE 157
+P K LP +EDS+ R KKT IA+
Sbjct: 489 KPTKDLQSPLPSVEEDSSNRDKKTDIAD 516
>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 649
Score = 23.4 bits (48), Expect = 8.6
Identities = 11/38 (28%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Frame = +1
Query: 34 SWKK---EDCNRRRKKTATAEERRLQPAEERRLQSPKK 138
+WKK E+ NR++++ ++ +L+ ERR ++ K
Sbjct: 58 NWKKQEQEEINRKKEEELKSKFEKLRQKNERRRRTQGK 95
>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 377
Score = 23.4 bits (48), Expect = 8.6
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = -3
Query: 272 FGDCSLLSSAIAVFILRRLQFSFFGDCN 189
+G C L +S IL+ ++ FG CN
Sbjct: 297 YGFCELGTSCKNQHILQCTDYAMFGSCN 324
>SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit
Prp3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 542
Score = 23.4 bits (48), Expect = 8.6
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +1
Query: 40 KKEDCNRRRKKTATAEERRLQPAEERRLQSPKKED 144
+K+ RR + EER+L P EER+ ++ +K+D
Sbjct: 358 RKQVEERRLRHERENEERKLTP-EERKEKAFRKKD 391
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.313 0.126 0.355
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,327,419
Number of Sequences: 5004
Number of extensions: 26340
Number of successful extensions: 267
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 231
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 87815546
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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