Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_C04
(325 letters)
Database: mosquito
2352 sequences; 563,979 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles ... 31 0.008
AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative different... 25 0.54
AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein. 25 0.71
AF387862-1|AAL56547.1| 476|Anopheles gambiae gag polyprotein pr... 23 2.9
AJ439353-3|CAD27925.1| 1200|Anopheles gambiae putative TPR-conta... 23 3.8
AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcript... 23 3.8
AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein. 22 5.0
U50468-1|AAA93472.1| 91|Anopheles gambiae protein ( Anopheles ... 21 8.8
DQ303468-1|ABC18327.1| 1115|Anopheles gambiae putative methopren... 21 8.8
CR954256-4|CAJ14145.1| 1494|Anopheles gambiae tensin protein. 21 8.8
AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcript... 21 8.8
>M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles
gambiae RT2 retroposon. ).
Length = 1222
Score = 31.5 bits (68), Expect = 0.008
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 4/93 (4%)
Frame = +1
Query: 28 RRSWKKEDC----NRRRKKTATAEERRLQPAEERRLQSPKKEDCNRRRKKTAIAEERRLQ 195
+R+W +E N ++ A E Q AE RR ++ ++ + NRR EERR
Sbjct: 1071 QRAWDEERAALAVNVIERQDEDAAELEAQRAEVRRARNERR-NANRRAATARRREERRAG 1129
Query: 196 SPKKENCNRRRMKTAIAEERRLQSPKKEDRNRR 294
P + R + A R ++ RNRR
Sbjct: 1130 LPPTPPASPRTAQRRAALRERQARFRERRRNRR 1162
>AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative
differentiation regulator protein.
Length = 1283
Score = 25.4 bits (53), Expect = 0.54
Identities = 15/82 (18%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Frame = +2
Query: 62 EERRLQPPKKEDCNLPKKED-SNRRRKKTAIAEERRLQSPKKEDCNRRRKKTAIAEE*KL 238
EE R + ++ K+ + +R ++ E+R + +KE+ R++++ E +
Sbjct: 454 EEERAREAREAAIEREKERELREQREREQREKEQREKEQREKEERERQQREKEQREREQR 513
Query: 239 QSPKKEDCNRRRKKTAIAEERR 304
+ ++ + R R++ E R
Sbjct: 514 EKEREREAARERERERERERER 535
Score = 25.0 bits (52), Expect = 0.71
Identities = 12/66 (18%), Positives = 29/66 (43%)
Frame = +1
Query: 61 RRKKTATAEERRLQPAEERRLQSPKKEDCNRRRKKTAIAEERRLQSPKKENCNRRRMKTA 240
+ ++ ER + E+R + +KE+ R++++ E + + ++ R R +
Sbjct: 470 KERELREQREREQREKEQREKEQREKEERERQQREKEQREREQREKEREREAARERERER 529
Query: 241 IAEERR 258
E R
Sbjct: 530 ERERER 535
>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
Length = 1229
Score = 25.0 bits (52), Expect = 0.71
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Frame = +2
Query: 134 RKKTAIAEERRLQSPKKEDCNRRRKKTAIA-EE*KLQSPKKEDCNRRRKKTAIAEER--R 304
+++TA+ EE KED NR + + +A EE + KK RK+ + ++ R
Sbjct: 159 KERTALFEEISGSGLLKEDYNRLKHEMQMAEEETQFTYQKKRGIAAERKEARLEKQEADR 218
Query: 305 LQSPKKE 325
S K+E
Sbjct: 219 YASLKQE 225
>AF387862-1|AAL56547.1| 476|Anopheles gambiae gag polyprotein
protein.
Length = 476
Score = 23.0 bits (47), Expect = 2.9
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 6/64 (9%)
Frame = +1
Query: 46 EDCNRRRKKTATAEE-RRLQPAEE---RRLQSP--KKEDCNRRRKKTAIAEERRLQSPKK 207
++ +R +K+ +E R+ P ++ R + P K DC T + R S K
Sbjct: 178 DEAQKRMEKSHQSESILRVGPEKKITCHRCRKPGHMKRDCPMESNNTPTSTTMRDYSRKN 237
Query: 208 ENCN 219
ENC+
Sbjct: 238 ENCS 241
>AJ439353-3|CAD27925.1| 1200|Anopheles gambiae putative TPR-containing
phosphoprotein protein.
Length = 1200
Score = 22.6 bits (46), Expect = 3.8
Identities = 17/78 (21%), Positives = 32/78 (41%), Gaps = 1/78 (1%)
Frame = +1
Query: 64 RKKTATAEERRLQPAEERRLQSPKKEDCNRRRKKTAIAEERRLQSPKKENCNRRRMKTAI 243
R + EER L+ +E + K+ RR+ + + + K + + K A+
Sbjct: 829 RARKIDEEERSLRQKQELEREEFKRRQAEDRRRMEEMRRKAHEEMLLKRQEYKEKTKNAL 888
Query: 244 -AEERRLQSPKKEDRNRR 294
E ++ KK R R+
Sbjct: 889 FFAEPAPEAKKKGGRGRK 906
>AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcriptase
protein.
Length = 1248
Score = 22.6 bits (46), Expect = 3.8
Identities = 12/45 (26%), Positives = 24/45 (53%)
Frame = +1
Query: 88 ERRLQPAEERRLQSPKKEDCNRRRKKTAIAEERRLQSPKKENCNR 222
E + AE+R+L SP D + ++ A + +++ KK+ +R
Sbjct: 305 ENECRIAEQRQLASPTDPDISALDRQARHALKTAIRASKKQFFDR 349
Score = 22.2 bits (45), Expect = 5.0
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = +2
Query: 149 IAEERRLQSPKKEDCNRRRKKTAIAEE*KLQSPKKEDCNR 268
IAE+R+L SP D + ++ A + +++ KK+ +R
Sbjct: 310 IAEQRQLASPTDPDISALDRQARHALKTAIRASKKQFFDR 349
>AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.
Length = 1187
Score = 22.2 bits (45), Expect = 5.0
Identities = 9/31 (29%), Positives = 19/31 (61%)
Frame = +3
Query: 177 RRKKIAIAEERKLQSPKNENCNRRRKKTAIA 269
RRKK+ +++K+Q+ + ++KK +A
Sbjct: 1001 RRKKVVEDDKKKIQAIITDLDEEKKKKLKVA 1031
>U50468-1|AAA93472.1| 91|Anopheles gambiae protein ( Anopheles
gambiae putativetubulin alpha chain mRNA, complete cds.
).
Length = 91
Score = 21.4 bits (43), Expect = 8.8
Identities = 8/28 (28%), Positives = 13/28 (46%)
Frame = +3
Query: 213 LQSPKNENCNRRRKKTAIAEERRPQSPK 296
+ S + C R R+ A+ P SP+
Sbjct: 28 MASNRTVRCPRTRRSEAVMTRSTPSSPR 55
>DQ303468-1|ABC18327.1| 1115|Anopheles gambiae putative
methoprene-tolerant protein protein.
Length = 1115
Score = 21.4 bits (43), Expect = 8.8
Identities = 11/36 (30%), Positives = 16/36 (44%)
Frame = +2
Query: 113 KEDSNRRRKKTAIAEERRLQSPKKEDCNRRRKKTAI 220
+ + NRR K +E P + RR KTA+
Sbjct: 229 RAEKNRRDKLNGSIQELSAMVPHVAESPRRVDKTAV 264
>CR954256-4|CAJ14145.1| 1494|Anopheles gambiae tensin protein.
Length = 1494
Score = 21.4 bits (43), Expect = 8.8
Identities = 7/24 (29%), Positives = 14/24 (58%)
Frame = +2
Query: 86 KKEDCNLPKKEDSNRRRKKTAIAE 157
+ LP++ED+ R TA+++
Sbjct: 681 RSHSAQLPQREDARSRTPLTAVSD 704
>AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcriptase
protein.
Length = 1173
Score = 21.4 bits (43), Expect = 8.8
Identities = 13/48 (27%), Positives = 18/48 (37%)
Frame = +3
Query: 180 RKKIAIAEERKLQSPKNENCNRRRKKTAIAEERRPQSPKKDDCNRRRK 323
R + +ER + + N RR ER P P RRR+
Sbjct: 1045 RNADVLRQERLRRYNETRNAARRAATQQRQAERLPPPPPSPRTERRRE 1092
Database: mosquito
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 563,979
Number of sequences in database: 2352
Lambda K H
0.313 0.126 0.355
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 305,203
Number of Sequences: 2352
Number of extensions: 5009
Number of successful extensions: 24
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 563,979
effective HSP length: 56
effective length of database: 432,267
effective search space used: 22045617
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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