Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_C01
         (384 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual        32   0.035
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    30   0.11 
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    26   1.8  
SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr 2|||...    25   3.1  
SPAC637.13c |||cytoskeletal signaling protein|Schizosaccharomyce...    24   7.1  
SPCC24B10.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    24   9.4  

>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1279

 Score = 31.9 bits (69), Expect = 0.035
 Identities = 17/54 (31%), Positives = 33/54 (61%)
 Frame = +1

Query: 217 QETTYLYIPNNAVGAIIGTKGSHIRNIIRFSNASVKIAPLEQDKQPESQNNAQQ 378
           +ET  +  P   VGAIIGT G ++++I+  ++  ++I P   +   ES ++A++
Sbjct: 224 RETKTMPCPVFVVGAIIGTNGQNLKSIMDRTSTRIQI-PKRNNTANESSDDAKK 276



 Score = 26.6 bits (56), Expect = 1.3
 Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +1

Query: 223  TTYLYIPNNAVGAIIGTKGSHIRNIIRFSNASVKIAPLE-QDKQPESQNNAQQE 381
            T+ + IP+ AV  ++G  GS + NI    +  + I  +  ++  P S   A+ +
Sbjct: 884  TSTIDIPSKAVSRVVGRNGSTVENIRTQFDVKIDIGDVSTEETTPVSVRGAKAD 937



 Score = 24.6 bits (51), Expect = 5.4
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +1

Query: 229  YLYIPNNAVGAIIGTKGSHIRNIIRFSNASVKI 327
            YL IP N    IIG+ GS I  I + +   + +
Sbjct: 1211 YLGIPTNLHRRIIGSGGSIINKIRKIAQVKIDV 1243


>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 30.3 bits (65), Expect = 0.11
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +2

Query: 302 DSAMPLLRSH-HWNKTSNLRARTMLSK 379
           D   PL ++H HWN TSNL+   +L K
Sbjct: 778 DKKPPLFKAHDHWNNTSNLKDSAVLFK 804


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = +3

Query: 138  WRPTTIPAANLRSFSWSDCTTRRW*FTGDNILV 236
            W+  + P+  LR  +W+    ++W   GD+++V
Sbjct: 915  WKTVSTPSEKLRKPTWNGTNLQKW--DGDHLIV 945


>SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 565

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = -1

Query: 171 VDWRREWWWGATEAASCRHHRHRVQA 94
           +D + +W+W  T   S  H+  + QA
Sbjct: 334 IDRKHQWYWNLTSTPSVFHYLIKAQA 359


>SPAC637.13c |||cytoskeletal signaling protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 498

 Score = 24.2 bits (50), Expect = 7.1
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = +3

Query: 63  GVSAAEYNVSRLAPYGDDVDRTRLLWRPTTIPAANLRS 176
           GV   E   +    Y   +DR  L WR ++ P  N+++
Sbjct: 146 GVKVVEKQRAETQKYLSLLDRALLPWRASSPPTVNIKN 183


>SPCC24B10.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 199

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 10/24 (41%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
 Frame = +3

Query: 81  YNV-SRLAPYGDDVDRTRLLWRPT 149
           YN   ++  YGD     RL W+PT
Sbjct: 144 YNYYDKIVDYGDTTLHGRLAWKPT 167


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.313    0.127    0.353 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,528,344
Number of Sequences: 5004
Number of extensions: 28041
Number of successful extensions: 56
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)