Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_B24
         (473 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|c...    28   0.63 
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    27   1.1  
SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|ch...    26   2.5  
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch...    26   2.5  
SPAC2F3.03c |rpa49|rpa51|DNA-directed RNA polymerase I complex |...    26   2.5  
SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr 3|||M...    25   4.5  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    25   4.5  
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c...    25   5.9  

>SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 386

 Score = 28.3 bits (60), Expect = 0.63
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = -1

Query: 353 NAQPTGETATKTQYIHLSISLTIYYTIH-FVIIIQKAISHIYIANRRYF 210
           N    G+   +T +IHL+ISL     I  F +++    +HI   N R+F
Sbjct: 196 NLHHAGDHEEETVHIHLTISLFASAIISGFALLLDHPSAHIRELNSRFF 244


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 16/38 (42%), Positives = 18/38 (47%)
 Frame = -3

Query: 297  ISYYILHNSFRYHYTKGNFSYIHCKSEVFLSFLTNKLK 184
            IS YI  N F       NFSYIH KS  F +   N  +
Sbjct: 1492 ISMYIFVNMF-ITVVFDNFSYIHTKSSSFTNLQRNDFR 1528


>SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 678

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = -3

Query: 276 NSFRYHYTKGNFSYIHCKSEVFLSFLTNKLKGRRPY 169
           N FRYH+     + +  K E F  FL    +  R +
Sbjct: 211 NQFRYHFMSQKQTNVLSKPEWFFEFLLKVFRSNRSF 246


>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
           Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +2

Query: 272 ELCNI**EISTNEYTVF*WQFLLSVERLKASRAWRALFD 388
           ELCN+  E ++ E T   +  L+     K SR WR+ ++
Sbjct: 445 ELCNMVIECNSQERTYAKFYGLIGERFCKLSRTWRSTYE 483


>SPAC2F3.03c |rpa49|rpa51|DNA-directed RNA polymerase I complex
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 425

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = -2

Query: 346 NRQEKLPLKHSIFIC-RYLLLYITQFISLSLYKRQFLIYTLQIGGISVISYKQIKRKETL 170
           N  + LP +HS+FI  R+  L   + +     KR  ++Y + +    + S + +  +ETL
Sbjct: 246 NWAKLLPYRHSLFINERFQRLLSIEEVD---QKRARILYYISLLQAFLFSRRSVGNRETL 302

Query: 169 RK 164
           RK
Sbjct: 303 RK 304


>SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 609

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -1

Query: 374 STHGTLSNAQPTGETATKTQY 312
           S  GT+   QPTG T T T Y
Sbjct: 313 SVSGTVEVVQPTGGTVTNTVY 333


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 264  YHYTKGNFSYIHCKSEVF 211
            Y Y  GN +Y+  +SEVF
Sbjct: 1246 YSYKSGNITYVFLQSEVF 1263


>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -1

Query: 380 KPSTHGTLSNAQPTGETAT 324
           KP+  GT SNA P   T+T
Sbjct: 175 KPAATGTTSNAPPASSTST 193


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,811,469
Number of Sequences: 5004
Number of extensions: 33873
Number of successful extensions: 114
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)