Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_B24
         (473 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1173 - 24526632-24526755,24527057-24527226,24527441-245275...    27   5.8  
06_03_0587 + 22555414-22557231                                         27   7.7  

>07_03_1173 -
           24526632-24526755,24527057-24527226,24527441-24527506,
           24527858-24527953,24528340-24528438,24528730-24528819,
           24529016-24529111,24529561-24529654,24530254-24530351,
           24530395-24530679
          Length = 405

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 12/45 (26%), Positives = 27/45 (60%)
 Frame = -1

Query: 440 QRELNPTLVLH*FEKRKYRIKPSTHGTLSNAQPTGETATKTQYIH 306
           Q++ +P L+LH F++ K +    +   L   +P G+ A+K ++++
Sbjct: 114 QQDRDPVLLLHGFDRCKLQHLNVSGYCLIEKRPPGDVASKREHLY 158


>06_03_0587 + 22555414-22557231
          Length = 605

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
 Frame = -3

Query: 264 YHYTKGNF----SYIHCKSEVFLSFLTNKLKGRRP 172
           Y+Y  GN      Y+H  S VFLSF  N+L G+ P
Sbjct: 523 YNYLTGNIPPTIGYLH--SMVFLSFSHNRLSGQIP 555


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,409,471
Number of Sequences: 37544
Number of extensions: 172542
Number of successful extensions: 350
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 350
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 967140324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)