Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_B24
         (473 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97008-1|AAB52310.1|  370|Caenorhabditis elegans Hypothetical pr...    30   0.74 
AF025471-7|AAB71066.3|  161|Caenorhabditis elegans Hypothetical ...    30   0.74 
Z68113-4|CAA92148.2| 1503|Caenorhabditis elegans Hypothetical pr...    28   3.9  

>U97008-1|AAB52310.1|  370|Caenorhabditis elegans Hypothetical
           protein C03G6.10 protein.
          Length = 370

 Score = 30.3 bits (65), Expect = 0.74
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = +3

Query: 207 TEIPPICNVYMRNCLLYNDNEMNCVIYSKRYRQMNILCFSG 329
           TEIP  C++  RN   Y+ + ++C      +R+M+++ F G
Sbjct: 5   TEIPTTCSICRRNAKGYHYDVISCKGCKTFFRRMSLINFQG 45


>AF025471-7|AAB71066.3|  161|Caenorhabditis elegans Hypothetical
           protein R52.9 protein.
          Length = 161

 Score = 30.3 bits (65), Expect = 0.74
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 300 DISYYILHNSFRYHYTKGNFSYIHCK 223
           ++ Y I  N  RY++ KGNF   HCK
Sbjct: 29  EVRYNIPWNLNRYNFFKGNFQMSHCK 54


>Z68113-4|CAA92148.2| 1503|Caenorhabditis elegans Hypothetical
           protein E03G2.2 protein.
          Length = 1503

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 15/29 (51%), Positives = 20/29 (68%)
 Frame = -2

Query: 334 KLPLKHSIFICRYLLLYITQFISLSLYKR 248
           K P +++ FI R LLL+ TQ ISL  Y+R
Sbjct: 192 KCPEENANFISRQLLLWFTQIISLG-YER 219


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,831,697
Number of Sequences: 27780
Number of extensions: 180353
Number of successful extensions: 448
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 448
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 860942358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)