Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_B24
         (473 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    23   1.3  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    22   2.9  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    22   2.9  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    22   2.9  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   3.8  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   3.8  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    21   6.7  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   6.7  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    21   8.9  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   8.9  

>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 365 RAWRALFDIYVSRTNVKP 418
           R+WR L D + +RTN  P
Sbjct: 269 RSWRNLMDEHSNRTNSDP 286


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 9/34 (26%), Positives = 19/34 (55%)
 Frame = -3

Query: 390 ISNKALHARDAFKRSTDRRNCH*NTVYSFVDISY 289
           +SNK +H  + +K + +  N + N    + +I+Y
Sbjct: 85  LSNKTIHNNNNYKYNYNNNNYNNNCKKLYYNINY 118


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 9/34 (26%), Positives = 19/34 (55%)
 Frame = -3

Query: 390 ISNKALHARDAFKRSTDRRNCH*NTVYSFVDISY 289
           +SNK +H  + +K + +  N + N    + +I+Y
Sbjct: 85  LSNKTIHNNNNYKYNYNNNNYNNNCKKLYYNINY 118


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 9/34 (26%), Positives = 19/34 (55%)
 Frame = -3

Query: 390 ISNKALHARDAFKRSTDRRNCH*NTVYSFVDISY 289
           +SNK +H  + +K + +  N + N    + +I+Y
Sbjct: 85  LSNKTIHNNNNYKYNYNNNNYNNNCKKLYYNINY 118


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 211 KYLRFAMYI*EIAFCIMI 264
           KYL FAM +  I+ C+ +
Sbjct: 309 KYLIFAMILVSISICVTV 326


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 211 KYLRFAMYI*EIAFCIMI 264
           KYL FAM +  I+ C+ +
Sbjct: 309 KYLIFAMILVSISICVTV 326


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 8/34 (23%), Positives = 19/34 (55%)
 Frame = -3

Query: 390 ISNKALHARDAFKRSTDRRNCH*NTVYSFVDISY 289
           +SN+ +H  + +K + +  N + N    + +I+Y
Sbjct: 85  LSNRTIHNNNNYKYNYNNNNYNNNCKKLYYNINY 118


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = -3

Query: 396 T*ISNKALHARDAFKRSTDRRNC 328
           T +     H RD    STD +NC
Sbjct: 304 TLVGTTITHLRDPDHHSTDIQNC 326


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 8/42 (19%), Positives = 21/42 (50%)
 Frame = -3

Query: 369 ARDAFKRSTDRRNCH*NTVYSFVDISYYILHNSFRYHYTKGN 244
           +++  +  T+R       + S +  +Y   +N+++Y+Y   N
Sbjct: 296 SKERSRDRTERERSKERKIISSLSNNYNYNNNNYKYNYNNYN 337


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -3

Query: 57  HPLRITRCF 31
           H LR+TRC+
Sbjct: 238 HKLRVTRCY 246


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,529
Number of Sequences: 438
Number of extensions: 2549
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12805416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)