Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_B23
(529 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC530.10c |anc1||adenine nucleotide carrier Anc1|Schizosacchar... 71 1e-13
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ... 36 0.003
SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 28 0.75
SPAC6C3.04 |cit1||citrate synthase|Schizosaccharomyces pombe|chr... 28 0.99
SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi... 28 0.99
SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter |Schiz... 26 3.0
SPAC869.02c |||nitric oxide dioxygenase |Schizosaccharomyces pom... 26 3.0
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 26 3.0
SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyce... 25 5.3
SPAC56F8.07 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 7.0
SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|ch... 25 7.0
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos... 25 9.2
SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex ... 25 9.2
>SPBC530.10c |anc1||adenine nucleotide carrier
Anc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 322
Score = 70.5 bits (165), Expect = 1e-13
Identities = 29/42 (69%), Positives = 36/42 (85%)
Frame = +2
Query: 386 FVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVF 511
F R E+G++S WRGN ANV+RYFPTQALNFAFKDK+K++F
Sbjct: 78 FKRTAAEEGVISLWRGNTANVLRYFPTQALNFAFKDKFKKMF 119
>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 317
Score = 36.3 bits (80), Expect = 0.003
Identities = 17/42 (40%), Positives = 25/42 (59%)
Frame = +2
Query: 380 NAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQ 505
+ V+I +GL+ F+RGN N +R FP A+ FA + KQ
Sbjct: 61 STLVKIWNREGLIGFFRGNGTNCLRAFPYGAVQFATFNMLKQ 102
>SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 418
Score = 28.3 bits (60), Expect = 0.75
Identities = 18/55 (32%), Positives = 25/55 (45%)
Frame = -1
Query: 187 VLFGWILADKEGLRHTREWKNHEKRPPIFNQEIWSYFGSPSCRFCSPGIHSLAPP 23
VLF W A ++ R T + N PPI ++ I SP F + I S+ P
Sbjct: 143 VLFCWSTAYQKQKRKTASYTNSPVTPPINDKNILLPEQSPLSNFSTTKISSINVP 197
>SPAC6C3.04 |cit1||citrate synthase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 473
Score = 27.9 bits (59), Expect = 0.99
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +1
Query: 97 D*KSGVVFRGFSIPVCAEVLP 159
D G+ FRG++IP C ++LP
Sbjct: 95 DPNEGIRFRGYTIPECQKLLP 115
>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 865
Score = 27.9 bits (59), Expect = 0.99
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +3
Query: 267 PSPRQPYAHRARQIAVQVQHVSKQIAEDPTGLQVVSVRTPSSAFP 401
P PR A Q +HV K++ E L ++ + TPS A P
Sbjct: 623 PPPRTTPYQNAEQKLKANKHVEKRVQESNELLDLIGLTTPSVAEP 667
>SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 298
Score = 26.2 bits (55), Expect = 3.0
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +2
Query: 392 RIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVF 511
+I K +G +RG ++ P +AL FA D Y +++
Sbjct: 54 KIVKNEGPHRLYRGILPPILMEAPKRALKFASNDTYSKLW 93
>SPAC869.02c |||nitric oxide dioxygenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 26.2 bits (55), Expect = 3.0
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Frame = -2
Query: 204 FCSIMWSSLGGYLRTRKDFGTHGNGKTTKNDPRFLIRRF--GVISDHPRADSAARGSIV- 34
+ S++W G +T +++ T +N R +RR GV+S+ D+ G IV
Sbjct: 216 YVSVLWEIPGLSHKTLREYSLSNRVDTCRNQFRISVRRVAGGVVSNFVH-DNLKVGDIVG 274
Query: 33 *RPPGGS 13
PP G+
Sbjct: 275 VSPPAGN 281
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 26.2 bits (55), Expect = 3.0
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = -3
Query: 323 LDLDSNLTRSMGVRLSWRRRGDTASQKVFGER 228
LD++ + + ++L W R D K FG+R
Sbjct: 684 LDMNQSFSEQESIKLRWENRIDQMFTKKFGKR 715
>SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 371
Score = 25.4 bits (53), Expect = 5.3
Identities = 16/61 (26%), Positives = 30/61 (49%)
Frame = +2
Query: 347 GPNWLTSGICPNAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVD 526
G N + G ++ I +G+ +RG ++ Y P+ ++ F +K K +F GV+
Sbjct: 45 GKNTMVLGGTLSSMRTIFHNEGIAGLYRGVGPMMLGYLPSWSIYFVVYEKCKVLF--GVN 102
Query: 527 K 529
K
Sbjct: 103 K 103
>SPAC56F8.07 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 183
Score = 25.0 bits (52), Expect = 7.0
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Frame = -3
Query: 245 KVFGERDWIGEIRHFVRLCGPLW--VDTCGQGRTSAHTGMEKPRKT 114
++F E+ W+ +F L PLW +D G+ S H P T
Sbjct: 132 ELFAEKKWMIMSFYFPYLAIPLWMAIDMGGRLVKSCHAAKSGPSST 177
>SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 271
Score = 25.0 bits (52), Expect = 7.0
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +2
Query: 380 NAFVRIPKEQGLLSFWRGNFANVIRYFPT 466
N + + +GL F+RG + V Y PT
Sbjct: 121 NTISTLARSEGLKGFYRGYWMGVAIYLPT 149
>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 731
Score = 24.6 bits (51), Expect = 9.2
Identities = 17/61 (27%), Positives = 26/61 (42%)
Frame = +1
Query: 163 PQVSTQRGPHNRTKCRISPIQSRSPKTFWLAVSPRRLQDSRTPIERVKLLSKSSTSANRS 342
P+ +T NRT + + P T + + R + RTP+ RVK S S +
Sbjct: 482 PKTATTTDSVNRTPSQRGRVAV--PSTPSVRSASRAMTSPRTPLPRVKNTQNPSRSISAE 539
Query: 343 P 345
P
Sbjct: 540 P 540
>SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex
subunit Sld3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 668
Score = 24.6 bits (51), Expect = 9.2
Identities = 18/77 (23%), Positives = 32/77 (41%)
Frame = +3
Query: 108 GGRFSWFFHSRVCRSPSLSASIHPKRTT*SNKMSNLADPVAFAKDFLAGGISAPSPRQPY 287
G R++ F S SL + + T S +SN+++ + F + + +PS +
Sbjct: 88 GSRYALIFLSEKLDFKSLKVIANHQLTKSSKSLSNVSNKPLGDQLFRSNSLMSPSLLKKE 147
Query: 288 AHRARQIAVQVQHVSKQ 338
HR + A Q Q
Sbjct: 148 LHRIQSDASQANERESQ 164
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,390,044
Number of Sequences: 5004
Number of extensions: 51287
Number of successful extensions: 161
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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