Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_B23
         (529 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...   102   3e-24
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...   102   3e-24
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    23   1.5  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   2.6  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   4.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   4.5  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   5.9  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   5.9  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  102 bits (244), Expect = 3e-24
 Identities = 45/50 (90%), Positives = 47/50 (94%)
 Frame = +2

Query: 380 NAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDK 529
           + FVRIPKEQG LS+WRGN ANVIRYFPTQALNFAFKDKYKQVFLGGVDK
Sbjct: 58  DCFVRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDK 107



 Score = 58.0 bits (134), Expect = 6e-11
 Identities = 29/50 (58%), Positives = 38/50 (76%), Gaps = 1/50 (2%)
 Frame = +3

Query: 204 MSNLADPVAFAKDFLAGGISAPSPRQPYAHRAR-QIAVQVQHVSKQIAED 350
           MS LADPVAFAKDFLAGG++A   +   A   R ++ +QVQH+SKQI+E+
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEE 50


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  102 bits (244), Expect = 3e-24
 Identities = 45/50 (90%), Positives = 47/50 (94%)
 Frame = +2

Query: 380 NAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDK 529
           + FVRIPKEQG LS+WRGN ANVIRYFPTQALNFAFKDKYKQVFLGGVDK
Sbjct: 58  DCFVRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDK 107



 Score = 58.0 bits (134), Expect = 6e-11
 Identities = 29/50 (58%), Positives = 38/50 (76%), Gaps = 1/50 (2%)
 Frame = +3

Query: 204 MSNLADPVAFAKDFLAGGISAPSPRQPYAHRAR-QIAVQVQHVSKQIAED 350
           MS LADPVAFAKDFLAGG++A   +   A   R ++ +QVQH+SKQI+E+
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEE 50


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +1

Query: 277 DSRTPIERVKLLSKSSTSANRSPRTQLAYKWYLSERL 387
           + +  +ER K  SKS  S +RS  +  +  + LS++L
Sbjct: 75  EKKLVLERSKTKSKSPESRDRSNTSNTSKTFILSDKL 111


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -2

Query: 144 THGNGKTTKNDPRFLIRRFGVISD 73
           THG G  T      LIR  G +S+
Sbjct: 55  THGKGTPTVVKTNILIRSMGPVSE 78


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +3

Query: 273  PRQPYAHRARQIAVQVQHVSKQIAEDPTGLQVVS 374
            P  PYA    ++    ++  + IAE P G  V S
Sbjct: 961  PPLPYAALIDELKPATRYTIRVIAEGPAGRSVPS 994


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +3

Query: 273  PRQPYAHRARQIAVQVQHVSKQIAEDPTGLQVVS 374
            P  PYA    ++    ++  + IAE P G  V S
Sbjct: 957  PPLPYAALIDELKPATRYTIRVIAEGPAGRSVPS 990


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -1

Query: 343 AICLLTCWT 317
           A C+L+CWT
Sbjct: 103 ATCVLSCWT 111


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -1

Query: 343 AICLLTCWT 317
           A C+L+CWT
Sbjct: 156 ATCVLSCWT 164


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,235
Number of Sequences: 438
Number of extensions: 4162
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14845611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)