Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_B20
(474 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc... 35 0.007
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 34 0.013
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 29 0.27
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 29 0.48
SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces pomb... 27 1.1
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|... 27 1.5
SPAC328.07c |||heavy metal ion homeostasis protein |Schizosaccha... 27 1.5
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 1.9
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 1.9
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 1.9
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch... 26 2.5
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 26 3.4
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb... 26 3.4
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces... 26 3.4
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom... 26 3.4
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 25 4.5
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 25 4.5
SPCC1442.02 ||SPCC1450.18|DUF1760 family protein|Schizosaccharom... 25 5.9
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc... 25 5.9
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 25 7.8
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi... 25 7.8
SPBP35G2.09 |usp103|yhc1|U1 snRNP-associated protein Usp103 |Sch... 25 7.8
>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
Shk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 658
Score = 34.7 bits (76), Expect = 0.007
Identities = 27/103 (26%), Positives = 50/103 (48%), Gaps = 6/103 (5%)
Frame = -3
Query: 418 PALALPEPSALRHTSIQAS-RATPLSRAAHTTSRAALRPPRTSSASTCTARPSPGQIT-- 248
P+ P+P A+ + + PLS++ T SR +L + SS+S + + +
Sbjct: 43 PSRTAPKPPAINTNLAEDTFSGFPLSQSRTTVSRVSLGSRQHSSSSIRKLQTNVSDVRSY 102
Query: 247 -RTNREECA--SYTSTRLAVEQGGGSAPTVGTASSSPHTRRNT 128
N+++ A ++ S+ + GGGS+PT S S R++T
Sbjct: 103 DERNQKKSAFENFVSSMSSFLTGGGSSPTSSYGSGSASPRKST 145
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 33.9 bits (74), Expect = 0.013
Identities = 27/100 (27%), Positives = 43/100 (43%), Gaps = 4/100 (4%)
Frame = -3
Query: 352 PLSRAAHTTSRAALRPPRTSSASTCTARPSPGQITRTNREECAS-YTSTRLAVEQG---G 185
P+S A + A + P +++ T P+P R N + A+ TST ++Q
Sbjct: 999 PVSMPAAKSKPAPMANPVSTAQQTQNRPPAPAMQARPNTTQAAAPVTSTTTTIKQATTVS 1058
Query: 184 GSAPTVGTASSSPHTRRNTDRFPRAATKNGVSPHSDIVFP 65
S P T +S+ + N + P A N VS S + P
Sbjct: 1059 ASKPAPSTVTSAASSPSNISK-PSAPVANNVSKPSAVPPP 1097
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 29.5 bits (63), Expect = 0.27
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = -3
Query: 388 LRHTSIQASRATPLSRAAHTTSRAALRPPRTSSASTCTARPSP 260
LRH ++ A P S A T ++ LRPP ++ PSP
Sbjct: 112 LRHIGKSSASAAPPSAPAPPTPQSELRPPTSAPPRPSIPPPSP 154
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 28.7 bits (61), Expect = 0.48
Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Frame = -3
Query: 394 SALRHTSIQASRATPLSRAAHTTSR--AALRPPRTSSASTCTARPSPGQITRTNREECAS 221
+++ TS ++ +TPL+ A TTS ++ P +S+ T+ S ++ N S
Sbjct: 376 TSVNSTSATSASSTPLTSANSTTSTSVSSTAPSYNTSSVLPTSSVSSTPLSSANSTTATS 435
Query: 220 YTSTRLAVEQGGGSAPTVGTASSSPHTRRNT 128
+ST L+ ++ T +ASS+P + N+
Sbjct: 436 ASSTPLS----SVNSTTATSASSTPLSSVNS 462
Score = 27.9 bits (59), Expect = 0.83
Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Frame = -3
Query: 394 SALRHTSIQASRATPLSRAAHTTSR--AALRPPRTSSASTCTARPSPGQITRTNREECAS 221
+++ TS ++ +TPL+ A TTS ++ P +S+ T+ S ++ N S
Sbjct: 490 TSVNSTSATSASSTPLTSANSTTSTSVSSTAPSYNTSSVLPTSSVSSTPLSSANSTTATS 549
Query: 220 YTSTRLAVEQGGGSAPTVGTASSSP 146
+ST L ++ T +ASS+P
Sbjct: 550 ASSTPLT----SVNSTTATSASSTP 570
>SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 478
Score = 27.5 bits (58), Expect = 1.1
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +1
Query: 94 RRS*WRRVGTGPCFCACGVRSWR 162
RR WRR G C CG ++WR
Sbjct: 173 RRYVWRRNENGRFQCVCGRQNWR 195
>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 194
Score = 27.1 bits (57), Expect = 1.5
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 6/44 (13%)
Frame = -3
Query: 415 ALALPEPSALRHTSIQASRATPL-----SRA-AHTTSRAALRPP 302
AL LP+PSAL TS +A+ + SR+ AH+TSR+ P
Sbjct: 88 ALGLPQPSALALTSSKAANRSSTNTEKDSRSIAHSTSRSRSTSP 131
>SPAC328.07c |||heavy metal ion homeostasis protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 277
Score = 27.1 bits (57), Expect = 1.5
Identities = 20/81 (24%), Positives = 32/81 (39%), Gaps = 3/81 (3%)
Frame = -3
Query: 301 RTSSASTCTARPSPGQITRTNREECASYTSTRLAVEQGGGSAPTVGT---ASSSPHTRRN 131
R+++ S A P E Y+S R ++E + T + S H R +
Sbjct: 21 RSTNRSELAAAFEPPDDDVEYSETAPLYSSARASIEGEEAFYQHLSTPDPGNDSGHVRSS 80
Query: 130 TDRFPRAATKNGVSPHSDIVF 68
DR P ++ + H D VF
Sbjct: 81 NDRIPSTSSNHADGHHVDSVF 101
>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 751
Score = 26.6 bits (56), Expect = 1.9
Identities = 21/95 (22%), Positives = 41/95 (43%)
Frame = -3
Query: 361 RATPLSRAAHTTSRAALRPPRTSSASTCTARPSPGQITRTNREECASYTSTRLAVEQGGG 182
R + R H+ + LR P+ SA + S + + A YT+ + + ++ G
Sbjct: 413 RIVKVERKVHSLNMT-LRSPKAGSAGKENSWRS--KYLSEGKNSKAKYTAKQPSYDRAGS 469
Query: 181 SAPTVGTASSSPHTRRNTDRFPRAATKNGVSPHSD 77
S + +S+SP + + R T+N + + D
Sbjct: 470 SLASPTKSSASPLVKAPKETPERLCTENQSTENED 504
>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 262
Score = 26.6 bits (56), Expect = 1.9
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = -3
Query: 436 PHQWAHPALALPEPSALRHTSIQASRATPLSRAAHTTSRAALRPP 302
P A+ L +P P + S AS + P + AA T S PP
Sbjct: 180 PTASANAPLPVPPPRRVSQNSSYASGSVPAATAASTASPVKKPPP 224
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.6 bits (56), Expect = 1.9
Identities = 28/99 (28%), Positives = 38/99 (38%)
Frame = -3
Query: 298 TSSASTCTARPSPGQITRTNREECASYTSTRLAVEQGGGSAPTVGTASSSPHTRRNTDRF 119
TSSAST + SP T T+ C + TS GG S+ + + P T ++
Sbjct: 95 TSSASTTGSSSSPLPSTSTS---CTTSTS---IPPTGGSSSLSTPITPTVPPTSTSSTSI 148
Query: 118 PRAATKNGVSPHSDIVFPLYG*TRCRCAPSCRIPAARGS 2
P T + + P T C S IP GS
Sbjct: 149 PIPPTSTSSTDTNSNPLPT---TSTSCTTSTSIPPTGGS 184
Score = 25.4 bits (53), Expect = 4.5
Identities = 29/126 (23%), Positives = 45/126 (35%)
Frame = -3
Query: 379 TSIQASRATPLSRAAHTTSRAALRPPRTSSASTCTARPSPGQITRTNREECASYTSTRLA 200
T + TP T+S + PP ++S++ ++ P P T C + TS
Sbjct: 294 TGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPSTST-----SCTTSTS---I 345
Query: 199 VEQGGGSAPTVGTASSSPHTRRNTDRFPRAATKNGVSPHSDIVFPLYG*TRCRCAPSCRI 20
G + P T + + +T P + + G S PL T C S I
Sbjct: 346 PPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSS-----PLLS-TSTSCTTSTSI 399
Query: 19 PAARGS 2
P S
Sbjct: 400 PPTGNS 405
>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 677
Score = 26.2 bits (55), Expect = 2.5
Identities = 18/70 (25%), Positives = 27/70 (38%)
Frame = -3
Query: 340 AAHTTSRAALRPPRTSSASTCTARPSPGQITRTNREECASYTSTRLAVEQGGGSAPTVGT 161
AAHT +++ P R + T P PG + S T+ G S T G
Sbjct: 420 AAHTQDLSSVIPRRIALRDGWTMLPIPGTRRIPTYSQSTSTTNPSATPTTGDPSNSTYGG 479
Query: 160 ASSSPHTRRN 131
+ P++ N
Sbjct: 480 PQTFPNSGNN 489
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 25.8 bits (54), Expect = 3.4
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = -3
Query: 445 PNAPHQWAHPALALPEPSALRHTSIQASRATP-LSRAAHTTSRAALRPPRTSSASTCTA 272
PN P P++A PS++ + +S P S AH S A P S+A+ +A
Sbjct: 1490 PNVPVPSMIPSVAQQPPSSVAPATAPSSTLPPSQSSFAHVPSPAPPAPQHPSAAALSSA 1548
>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1283
Score = 25.8 bits (54), Expect = 3.4
Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 6/74 (8%)
Frame = -3
Query: 298 TSSASTCTARPSPGQITRTNREECASYTSTRLAVEQGGGSA----PTVGTASSS--PHTR 137
TSS + P+ G +T T +TST A G+ PT GT + + +
Sbjct: 793 TSSGAVIVVEPTAGTVTETIVSGSIPFTSTIPAQGTTSGTVEVVEPTAGTVTETIISGSV 852
Query: 136 RNTDRFPRAATKNG 95
T FP T +G
Sbjct: 853 GYTSTFPAQGTTSG 866
>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 637
Score = 25.8 bits (54), Expect = 3.4
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -3
Query: 400 EPSALRHTSIQASRATPLSRAAHTTSRA-ALRPPRTSSASTCTARP 266
EP++ + I + ++P A S + ++ PP T SAST +P
Sbjct: 160 EPTSAQTNHIITANSSPSGNAGSNASASMSVPPPLTPSASTINDQP 205
>SPBC887.09c |||leucine-rich repeat protein Sog2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 886
Score = 25.8 bits (54), Expect = 3.4
Identities = 21/89 (23%), Positives = 36/89 (40%), Gaps = 1/89 (1%)
Frame = -3
Query: 412 LALPEPSALRHTSIQASRATPLSRAAHTTSRAALRPPRTSSASTCTARPSPGQITRTNRE 233
L PS H+ ++TP S + T + ++ A CT PS Q+ + + +
Sbjct: 240 LTFVTPSPHSHSPAGHQQSTPKSTLSKTNENSEGTLYDSNVAHGCTHPPSLNQLNKFHLD 299
Query: 232 ECASYTSTRLAVEQGGG-SAPTVGTASSS 149
R +V G ++P+V SS
Sbjct: 300 ASPRQARPRRSVSLATGLNSPSVSKPPSS 328
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 25.4 bits (53), Expect = 4.5
Identities = 17/89 (19%), Positives = 41/89 (46%)
Frame = -3
Query: 346 SRAAHTTSRAALRPPRTSSASTCTARPSPGQITRTNREECASYTSTRLAVEQGGGSAPTV 167
S ++ T+S ++ P +S+ +T + S + ++ +S +S+ + S+ +
Sbjct: 131 SVSSTTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 190
Query: 166 GTASSSPHTRRNTDRFPRAATKNGVSPHS 80
++SSS + ++ T + S HS
Sbjct: 191 SSSSSSSSSSSSSSSSSVPITSSTSSSHS 219
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 25.4 bits (53), Expect = 4.5
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -3
Query: 226 ASYTSTRLAVEQGGGSAPTVGTASSSPHTRRNTD 125
ASYT++ + +EQ G ASS P R T+
Sbjct: 1571 ASYTNSEMNIEQFDGQKKKCVLASSLPSEERFTE 1604
>SPCC1442.02 ||SPCC1450.18|DUF1760 family
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 562
Score = 25.0 bits (52), Expect = 5.9
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +3
Query: 48 LVYPYSGNTMSECGETPFLVAARGN-RSVFLR 140
+V PY G +E E +A GN R VFL+
Sbjct: 72 MVLPYVGKVQNEADEFVDFLAKNGNPREVFLK 103
>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 934
Score = 25.0 bits (52), Expect = 5.9
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = -3
Query: 241 NREECASYTSTRLAVEQGGGSAPTVGTASSSPHTRR-NTDRFPRA 110
NRE+ S T L + G T+ TA+ S TR+ N+ P A
Sbjct: 805 NREDFDSITELVLPADAGEKLMKTIPTAAKSAFTRKYNSSSHPIA 849
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 24.6 bits (51), Expect = 7.8
Identities = 15/62 (24%), Positives = 24/62 (38%)
Frame = -3
Query: 442 NAPHQWAHPALALPEPSALRHTSIQASRATPLSRAAHTTSRAALRPPRTSSASTCTARPS 263
+AP +P+ P + +++Q S P A +A PP T + P
Sbjct: 449 SAPALSMNPSSLPPWQQPTQQSAVQPSNLVPSQNAPFIPGTSAPLPPTTFAPPGVPLPPI 508
Query: 262 PG 257
PG
Sbjct: 509 PG 510
>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1419
Score = 24.6 bits (51), Expect = 7.8
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +3
Query: 27 HEGAHLHLVYPYS 65
H GA +H VYPYS
Sbjct: 1098 HNGALVHWVYPYS 1110
>SPBP35G2.09 |usp103|yhc1|U1 snRNP-associated protein Usp103
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 24.6 bits (51), Expect = 7.8
Identities = 11/51 (21%), Positives = 25/51 (49%)
Frame = -3
Query: 376 SIQASRATPLSRAAHTTSRAALRPPRTSSASTCTARPSPGQITRTNREECA 224
++ A+ P+ A + T++ A P+T+++S + +TN + A
Sbjct: 105 AMNAAAFVPMMPAVNLTNQVAFSAPQTTASSNTQLTQQQQSLPQTNEHQRA 155
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,061,268
Number of Sequences: 5004
Number of extensions: 39443
Number of successful extensions: 155
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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