Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_B19
(464 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U10401-6|AAA19061.1| 697|Caenorhabditis elegans Hmg protein 4 p... 62 3e-10
AL110490-14|CAB54448.2| 95|Caenorhabditis elegans Hypothetical... 57 5e-09
AF056576-1|AAC78598.1| 95|Caenorhabditis elegans high mobility... 57 5e-09
AF000195-3|AAC24268.1| 689|Caenorhabditis elegans Hmg protein 3... 56 9e-09
U22831-3|AAK67237.1| 234|Caenorhabditis elegans Hmg protein 1.2... 48 4e-06
U22831-2|AAK67238.1| 233|Caenorhabditis elegans Hmg protein 1.2... 48 4e-06
U22831-1|AAK20071.1| 235|Caenorhabditis elegans Hmg protein 1.2... 48 4e-06
AF056577-1|AAC78599.1| 235|Caenorhabditis elegans high mobility... 48 4e-06
U38377-1|AAA79747.2| 283|Caenorhabditis elegans Sox (mammalian ... 46 2e-05
U80032-3|AAM15556.1| 404|Caenorhabditis elegans Sox (mammalian ... 44 7e-05
Z69792-4|CAA93665.1| 212|Caenorhabditis elegans Hypothetical pr... 43 9e-05
U64608-9|AAX88815.1| 319|Caenorhabditis elegans Egg laying defe... 41 4e-04
U64608-8|AAO91671.1| 316|Caenorhabditis elegans Egg laying defe... 41 4e-04
U64608-7|AAX88814.1| 422|Caenorhabditis elegans Egg laying defe... 41 4e-04
U64608-6|AAB04597.2| 470|Caenorhabditis elegans Egg laying defe... 41 4e-04
AF097319-1|AAD12252.1| 470|Caenorhabditis elegans Sox domain pr... 41 4e-04
AC024859-13|AAK29965.2| 338|Caenorhabditis elegans Hypothetical... 36 0.011
Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical pr... 32 0.23
Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical p... 32 0.23
Z72503-5|CAI79155.1| 513|Caenorhabditis elegans Hypothetical pr... 32 0.23
Z68006-1|CAA91998.1| 251|Caenorhabditis elegans Hypothetical pr... 31 0.41
Z67881-3|CAD44099.1| 1405|Caenorhabditis elegans Hypothetical pr... 31 0.54
Z50797-11|CAA90676.2| 1405|Caenorhabditis elegans Hypothetical p... 31 0.54
Z50797-9|CAL36516.1| 640|Caenorhabditis elegans Hypothetical pr... 31 0.54
AC024777-1|AAF60563.1| 133|Caenorhabditis elegans Hypothetical ... 29 1.6
AL117195-12|CAB60765.1| 425|Caenorhabditis elegans Hypothetical... 28 3.8
U41538-4|AAG00011.1| 175|Caenorhabditis elegans Hypothetical pr... 27 5.0
U97550-5|AAK18982.2| 497|Caenorhabditis elegans Hypothetical pr... 27 6.6
AF036702-13|AAB88379.2| 648|Caenorhabditis elegans Hypothetical... 27 8.8
AC024824-1|AAK85503.1| 679|Caenorhabditis elegans Hypothetical ... 27 8.8
>U10401-6|AAA19061.1| 697|Caenorhabditis elegans Hmg protein 4
protein.
Length = 697
Score = 61.7 bits (143), Expect = 3e-10
Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Frame = +3
Query: 66 KKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMK--DKSIWXX 239
KK+K + PKR SAYM W ++R ++K + G V ++AKKGG WK+M DK W
Sbjct: 548 KKDKDPNAPKRATSAYMQWFLASRNELKED--GDSVADVAKKGGAKWKTMSSDDKKKWEE 605
Query: 240 XXXXXXXQYAKDLESYNAN 296
+Y K+++ Y N
Sbjct: 606 KAEEDKSRYEKEMKEYRKN 624
>AL110490-14|CAB54448.2| 95|Caenorhabditis elegans Hypothetical
protein Y48B6A.14 protein.
Length = 95
Score = 57.2 bits (132), Expect = 5e-09
Identities = 27/73 (36%), Positives = 38/73 (52%)
Frame = +3
Query: 69 KNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKDKSIWXXXXX 248
K K + PKR MSA+ W+ RE+IK PG+ V ++AK G W + DKS W
Sbjct: 21 KAKDPNAPKRAMSAFFFWMQENRERIKK--PGMGVADVAKAAGVEWGKLTDKSRWEKKAA 78
Query: 249 XXXXQYAKDLESY 287
+Y D+ +Y
Sbjct: 79 DDKKRYEVDIANY 91
>AF056576-1|AAC78598.1| 95|Caenorhabditis elegans high mobility
group protein 1.1 protein.
Length = 95
Score = 57.2 bits (132), Expect = 5e-09
Identities = 27/73 (36%), Positives = 38/73 (52%)
Frame = +3
Query: 69 KNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKDKSIWXXXXX 248
K K + PKR MSA+ W+ RE+IK PG+ V ++AK G W + DKS W
Sbjct: 21 KAKDPNAPKRAMSAFFFWMQENRERIKK--PGMGVADVAKAAGVEWGKLTDKSRWEKKAA 78
Query: 249 XXXXQYAKDLESY 287
+Y D+ +Y
Sbjct: 79 DDKKRYEVDIANY 91
>AF000195-3|AAC24268.1| 689|Caenorhabditis elegans Hmg protein 3
protein.
Length = 689
Score = 56.4 bits (130), Expect = 9e-09
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Frame = +3
Query: 66 KKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMK--DKSIWXX 239
KK K ++PKR +AY++W N+ R +K + G + ++AKK G WKSM DK W
Sbjct: 553 KKTKDPNEPKRATTAYIIWFNANRNSMKED--GDTLGDVAKKAGAKWKSMSADDKKEWND 610
Query: 240 XXXXXXXQYAKDLESYNAN 296
+Y +++ Y N
Sbjct: 611 KAAQDKARYEAEMKEYKKN 629
>U22831-3|AAK67237.1| 234|Caenorhabditis elegans Hmg protein 1.2,
isoform b protein.
Length = 234
Score = 47.6 bits (108), Expect = 4e-06
Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Frame = +3
Query: 63 RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWK--SMKDKSIWX 236
++ K PKR +SA+ + R +I++ HP KV ++A++ G+MWK + K ++
Sbjct: 125 KRAKKDPHAPKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETKDMYE 184
Query: 237 XXXXXXXXQYAKDLESYNA 293
+YA ++ +Y A
Sbjct: 185 QKAQADKDRYADEMRNYKA 203
Score = 32.7 bits (71), Expect = 0.13
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Frame = +3
Query: 27 HQFKNNFKIFAIRKKNKMTDKPKR-PMSAYMLWLNSAREQIKSEHPG--LKVTEIAKKGG 197
HQ N M P R S Y ++ E+ K ++P ++VTEI+KK
Sbjct: 22 HQLPNPSATMYQATPRDMGKPPVRGKTSPYGFFVKMCYEEHKKKYPNENVQVTEISKKCS 81
Query: 198 EMWKSMKD 221
E WK+M D
Sbjct: 82 EKWKTMVD 89
>U22831-2|AAK67238.1| 233|Caenorhabditis elegans Hmg protein 1.2,
isoform c protein.
Length = 233
Score = 47.6 bits (108), Expect = 4e-06
Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Frame = +3
Query: 63 RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWK--SMKDKSIWX 236
++ K PKR +SA+ + R +I++ HP KV ++A++ G+MWK + K ++
Sbjct: 124 KRAKKDPHAPKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETKDMYE 183
Query: 237 XXXXXXXXQYAKDLESYNA 293
+YA ++ +Y A
Sbjct: 184 QKAQADKDRYADEMRNYKA 202
Score = 32.3 bits (70), Expect = 0.18
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +3
Query: 105 SAYMLWLNSAREQIKSEHPG--LKVTEIAKKGGEMWKSMKD 221
S Y ++ E+ K ++P ++VTEI+KK E WK+M D
Sbjct: 50 SPYGFFVKMCYEEHKKKYPNENVQVTEISKKCSEKWKTMVD 90
>U22831-1|AAK20071.1| 235|Caenorhabditis elegans Hmg protein 1.2,
isoform a protein.
Length = 235
Score = 47.6 bits (108), Expect = 4e-06
Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Frame = +3
Query: 63 RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWK--SMKDKSIWX 236
++ K PKR +SA+ + R +I++ HP KV ++A++ G+MWK + K ++
Sbjct: 126 KRAKKDPHAPKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETKDMYE 185
Query: 237 XXXXXXXXQYAKDLESYNA 293
+YA ++ +Y A
Sbjct: 186 QKAQADKDRYADEMRNYKA 204
Score = 32.3 bits (70), Expect = 0.18
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +3
Query: 105 SAYMLWLNSAREQIKSEHPG--LKVTEIAKKGGEMWKSMKD 221
S Y ++ E+ K ++P ++VTEI+KK E WK+M D
Sbjct: 50 SPYGFFVKMCYEEHKKKYPNENVQVTEISKKCSEKWKTMVD 90
>AF056577-1|AAC78599.1| 235|Caenorhabditis elegans high mobility
group protein 1.2 protein.
Length = 235
Score = 47.6 bits (108), Expect = 4e-06
Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Frame = +3
Query: 63 RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWK--SMKDKSIWX 236
++ K PKR +SA+ + R +I++ HP KV ++A++ G+MWK + K ++
Sbjct: 126 KRAKKDPHAPKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETKDMYE 185
Query: 237 XXXXXXXXQYAKDLESYNA 293
+YA ++ +Y A
Sbjct: 186 QKAQADKDRYADEMRNYKA 204
Score = 32.3 bits (70), Expect = 0.18
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +3
Query: 105 SAYMLWLNSAREQIKSEHPG--LKVTEIAKKGGEMWKSMKD 221
S Y ++ E+ K ++P ++VTEI+KK E WK+M D
Sbjct: 50 SPYGFFVKMCYEEHKKKYPNENVQVTEISKKCSEKWKTMVD 90
>U38377-1|AAA79747.2| 283|Caenorhabditis elegans Sox (mammalian sry
box) familyprotein 2, isoform a protein.
Length = 283
Score = 45.6 bits (103), Expect = 2e-05
Identities = 18/50 (36%), Positives = 33/50 (66%)
Frame = +3
Query: 75 KMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKDK 224
K D+ KRPM+A+M+W R+++ E+P + +EI+K+ G WK + ++
Sbjct: 55 KNDDRVKRPMNAFMVWSRGQRKKMALENPKMHNSEISKRLGTEWKMLSEQ 104
>U80032-3|AAM15556.1| 404|Caenorhabditis elegans Sox (mammalian sry
box) familyprotein 1 protein.
Length = 404
Score = 43.6 bits (98), Expect = 7e-05
Identities = 18/50 (36%), Positives = 30/50 (60%)
Frame = +3
Query: 75 KMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKDK 224
K ++ KRPM+A+M+W R +I P + EI+K+ G W+S+ D+
Sbjct: 88 KSSNHIKRPMNAFMVWSQMERRKICEHQPDMHNAEISKQLGSRWRSLTDE 137
>Z69792-4|CAA93665.1| 212|Caenorhabditis elegans Hypothetical
protein F40E10.2 protein.
Length = 212
Score = 43.2 bits (97), Expect = 9e-05
Identities = 16/47 (34%), Positives = 30/47 (63%)
Frame = +3
Query: 84 DKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKDK 224
D KRPM+A+M+W R ++ ++P + +EI+K+ G WK + ++
Sbjct: 46 DHVKRPMNAFMVWSRGQRRKMAQDNPKMHNSEISKRLGAEWKQLSEQ 92
>U64608-9|AAX88815.1| 319|Caenorhabditis elegans Egg laying
defective protein 13,isoform d protein.
Length = 319
Score = 41.1 bits (92), Expect = 4e-04
Identities = 18/53 (33%), Positives = 29/53 (54%)
Frame = +3
Query: 63 RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKD 221
R + K + KRPM+A+M+W R +I +P + + I+K G WK M +
Sbjct: 169 RPQAKSPNHIKRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSN 221
>U64608-8|AAO91671.1| 316|Caenorhabditis elegans Egg laying
defective protein 13,isoform b protein.
Length = 316
Score = 41.1 bits (92), Expect = 4e-04
Identities = 18/53 (33%), Positives = 29/53 (54%)
Frame = +3
Query: 63 RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKD 221
R + K + KRPM+A+M+W R +I +P + + I+K G WK M +
Sbjct: 166 RPQAKSPNHIKRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSN 218
>U64608-7|AAX88814.1| 422|Caenorhabditis elegans Egg laying
defective protein 13,isoform c protein.
Length = 422
Score = 41.1 bits (92), Expect = 4e-04
Identities = 18/53 (33%), Positives = 29/53 (54%)
Frame = +3
Query: 63 RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKD 221
R + K + KRPM+A+M+W R +I +P + + I+K G WK M +
Sbjct: 272 RPQAKSPNHIKRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSN 324
>U64608-6|AAB04597.2| 470|Caenorhabditis elegans Egg laying
defective protein 13,isoform a protein.
Length = 470
Score = 41.1 bits (92), Expect = 4e-04
Identities = 18/53 (33%), Positives = 29/53 (54%)
Frame = +3
Query: 63 RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKD 221
R + K + KRPM+A+M+W R +I +P + + I+K G WK M +
Sbjct: 320 RPQAKSPNHIKRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSN 372
>AF097319-1|AAD12252.1| 470|Caenorhabditis elegans Sox domain
protein COG-2 protein.
Length = 470
Score = 41.1 bits (92), Expect = 4e-04
Identities = 18/53 (33%), Positives = 29/53 (54%)
Frame = +3
Query: 63 RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKD 221
R + K + KRPM+A+M+W R +I +P + + I+K G WK M +
Sbjct: 320 RPQAKSPNHIKRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSN 372
>AC024859-13|AAK29965.2| 338|Caenorhabditis elegans Hypothetical
protein Y71H2AM.17 protein.
Length = 338
Score = 36.3 bits (80), Expect = 0.011
Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Frame = +3
Query: 90 PKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKD--KSIWXXXXXXXXXQ 263
P+RP+ YM + ++++E+P ++ +I K G+ W + D KS +
Sbjct: 26 PERPLQPYMRYSRKMWPKVRAENPEAQLWDIGKMIGKYWLDLPDGEKSHYQHEYELEKAD 85
Query: 264 YAKDLESYNAN 296
Y K ++ + N
Sbjct: 86 YEKQMKHFQGN 96
>Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical protein
C26C6.1a protein.
Length = 1883
Score = 31.9 bits (69), Expect = 0.23
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +3
Query: 78 MTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKDK 224
MT K + S Y+L+ R++I E+P E++K G WK + ++
Sbjct: 1445 MTPKAVKSKSGYILFSAEVRKRIMHENPDAGFGEVSKIVGIEWKKLSEE 1493
>Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical
protein C26C6.1a protein.
Length = 1883
Score = 31.9 bits (69), Expect = 0.23
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +3
Query: 78 MTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKDK 224
MT K + S Y+L+ R++I E+P E++K G WK + ++
Sbjct: 1445 MTPKAVKSKSGYILFSAEVRKRIMHENPDAGFGEVSKIVGIEWKKLSEE 1493
>Z72503-5|CAI79155.1| 513|Caenorhabditis elegans Hypothetical
protein C26C6.1b protein.
Length = 513
Score = 31.9 bits (69), Expect = 0.23
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +3
Query: 78 MTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKDK 224
MT K + S Y+L+ R++I E+P E++K G WK + ++
Sbjct: 75 MTPKAVKSKSGYILFSAEVRKRIMHENPDAGFGEVSKIVGIEWKKLSEE 123
>Z68006-1|CAA91998.1| 251|Caenorhabditis elegans Hypothetical
protein K09C8.2 protein.
Length = 251
Score = 31.1 bits (67), Expect = 0.41
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = -2
Query: 241 FSSQILLSFIDFHISPPFLAISVTFSPGCSDLICSLALLS 122
F LL+++ FH+ F A+SV+F + +C + LLS
Sbjct: 37 FIMACLLNYVSFHVGNDFYAVSVSFVHVGAVFVCIVILLS 76
>Z67881-3|CAD44099.1| 1405|Caenorhabditis elegans Hypothetical
protein T22H6.6a protein.
Length = 1405
Score = 30.7 bits (66), Expect = 0.54
Identities = 15/54 (27%), Positives = 33/54 (61%), Gaps = 3/54 (5%)
Frame = +3
Query: 63 RKKNKMT-DKP--KRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSM 215
R+++K++ ++P +RPM+A+M++ R + ++P ++K GE W S+
Sbjct: 831 RRRSKVSANEPHVRRPMNAFMIFSKRHRPLVHQQYPNKDNRTVSKILGEWWYSL 884
>Z50797-11|CAA90676.2| 1405|Caenorhabditis elegans Hypothetical
protein T22H6.6a protein.
Length = 1405
Score = 30.7 bits (66), Expect = 0.54
Identities = 15/54 (27%), Positives = 33/54 (61%), Gaps = 3/54 (5%)
Frame = +3
Query: 63 RKKNKMT-DKP--KRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSM 215
R+++K++ ++P +RPM+A+M++ R + ++P ++K GE W S+
Sbjct: 831 RRRSKVSANEPHVRRPMNAFMIFSKRHRPLVHQQYPNKDNRTVSKILGEWWYSL 884
>Z50797-9|CAL36516.1| 640|Caenorhabditis elegans Hypothetical
protein T22H6.6b protein.
Length = 640
Score = 30.7 bits (66), Expect = 0.54
Identities = 15/54 (27%), Positives = 33/54 (61%), Gaps = 3/54 (5%)
Frame = +3
Query: 63 RKKNKMT-DKP--KRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSM 215
R+++K++ ++P +RPM+A+M++ R + ++P ++K GE W S+
Sbjct: 66 RRRSKVSANEPHVRRPMNAFMIFSKRHRPLVHQQYPNKDNRTVSKILGEWWYSL 119
>AC024777-1|AAF60563.1| 133|Caenorhabditis elegans Hypothetical
protein Y42H9AR.2 protein.
Length = 133
Score = 29.1 bits (62), Expect = 1.6
Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Frame = -2
Query: 217 FIDFHISPPFLAISVTFSPGCS-DLICSLALLSHSI*ADIG-RFGLSVILFFF-LMAKIL 47
FI S + IS+ + GCS +I A + + +G F L + L F LMA I
Sbjct: 4 FITATYSADAVLISLLITTGCSASIILFAATTKKDLTSCLGVAFILGICLMLFGLMACIF 63
Query: 46 KLFLNW 29
+FLNW
Sbjct: 64 CIFLNW 69
>AL117195-12|CAB60765.1| 425|Caenorhabditis elegans Hypothetical
protein Y57A10A.19 protein.
Length = 425
Score = 27.9 bits (59), Expect = 3.8
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = +1
Query: 337 EGKRARKQPPLNPRKRRKSLKMRKVTKR 420
E +R R++ P +PR+RR+S + R V +R
Sbjct: 282 EDRRDRRRSPEDPRERRRSPEDRTVRRR 309
>U41538-4|AAG00011.1| 175|Caenorhabditis elegans Hypothetical
protein R04E5.9 protein.
Length = 175
Score = 27.5 bits (58), Expect = 5.0
Identities = 19/43 (44%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
Frame = +1
Query: 337 EGKRARKQPPLNPRKRRKS----LKMRKVTKRRRKANDLPIFK 453
+ K RKQ RK RKS K RK TKRRRK + K
Sbjct: 41 KSKIVRKQGRKTKRKTRKSKTGATKRRKGTKRRRKTTSKSLDK 83
>U97550-5|AAK18982.2| 497|Caenorhabditis elegans Hypothetical
protein T20F7.7 protein.
Length = 497
Score = 27.1 bits (57), Expect = 6.6
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -2
Query: 250 LAAFSSQILLSFIDFHISPPFLAISVTFSPGCSDLICS 137
L A SS L+F+ FH + F A+ + GC+ I S
Sbjct: 196 LLAQSSMKTLAFLPFHHASGFWALLICLLEGCTTYIMS 233
>AF036702-13|AAB88379.2| 648|Caenorhabditis elegans Hypothetical
protein F33D4.6b protein.
Length = 648
Score = 26.6 bits (56), Expect = 8.8
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +1
Query: 337 EGKRARKQPPLNPRKRRKSLKMRKVTKRR-RKANDL 441
E + A +PP RK RKS K K K+ RK DL
Sbjct: 391 EEEEATTEPPKKKRKMRKSHKTSKKEKKEIRKFPDL 426
>AC024824-1|AAK85503.1| 679|Caenorhabditis elegans Hypothetical
protein Y55B1BR.3 protein.
Length = 679
Score = 26.6 bits (56), Expect = 8.8
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +1
Query: 334 SEGKRARKQPPLNPRKRRKSLKMRKVTKRRRKAND 438
SE +R RK+ +K +KS K +K KR+R ND
Sbjct: 252 SEMERRRKKS----KKSKKSKKFKKSEKRKRAVND 282
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,906,339
Number of Sequences: 27780
Number of extensions: 164240
Number of successful extensions: 589
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 582
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 829055604
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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