Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_B18
         (558 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.07c |||D-amino acid oxidase |Schizosaccharomyces pombe|...    27   1.9  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    27   2.5  
SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   4.3  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    25   5.7  
SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1|...    25   5.7  
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr...    25   5.7  

>SPCC1450.07c |||D-amino acid oxidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 348

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 4/27 (14%)
 Frame = +1

Query: 298 CIYGYQ----FINSPIFLNFFFKYSIE 366
           CIYG++     IN+P +LN+ +K  IE
Sbjct: 132 CIYGHKATTFLINAPHYLNYMYKLLIE 158


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
 Frame = -3

Query: 301  CNAGFNFEKR*HNPVIVSFFFTSTFNLKNNFSAQHF--DSLSTLDVNDKMAT--HD*FRF 134
            CNA FNF K    PVI  + F++T  +K+     +   D ++ + +   M T  H   +F
Sbjct: 1674 CNA-FNFAKSHWEPVIEPWTFSTTAIMKDGMHEVNINSDDIAQISLTPMMVTDVHRLIKF 1732

Query: 133  WL 128
            +L
Sbjct: 1733 YL 1734


>SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 338

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -3

Query: 286 NFEKR*HNPVIVSFFFTSTFNLKNNFSA 203
           N  K+  N  I   FFT TF+L N F A
Sbjct: 7   NSSKKKRNTQIYRIFFTLTFSLSNLFLA 34


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1919

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +1

Query: 304 YGYQFINSPIFLNFFFKYS 360
           YG Q      F+ FFFKYS
Sbjct: 122 YGNQINQQETFIRFFFKYS 140


>SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 537

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 229 FNLKNNFSAQHFDSLSTLDVNDKMATHD*FRFW 131
           F  KN F     D+L++LDV + ++     RFW
Sbjct: 235 FTPKNQFVIYLEDTLASLDVVESLSPKKNVRFW 267


>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 585

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 209 KIVFQVKRACEEERDNNRVMLPFF 280
           K V  VK A  ++ DN +++LP F
Sbjct: 93  KDVLDVKAAASQQEDNMKIVLPSF 116


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,005,623
Number of Sequences: 5004
Number of extensions: 38564
Number of successful extensions: 98
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)