Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_B18
         (558 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    26   0.22 
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   2.8  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   6.4  

>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 26.2 bits (55), Expect = 0.22
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = -3

Query: 259 VIVSFFFTSTF-NLKNNF--SAQHFDSLSTLDVNDKMATHD*FRFWLHGDLSCA 107
           VI++ + TS   N+ N F  S    D +  L V    AT + F+ W+ GDL C+
Sbjct: 86  VILAVYHTSKLRNVTNMFIVSLAVADLMVGLAVLPFSATWEVFKVWIFGDLWCS 139



 Score = 21.8 bits (44), Expect = 4.8
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = +3

Query: 177 SVESESKCCAEKLFFRLNVLVKKNETITGLC 269
           S ES S+C  ++   +++V     ET+   C
Sbjct: 325 SPESNSRCSVKREKIKISVSYPSTETLNTKC 355


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 13/42 (30%), Positives = 18/42 (42%)
 Frame = -1

Query: 210 FPRNTLIHFQHLTSTTKWRHTISSDFGCTETYLAHTTSD*IN 85
           FPRN   +  +   T KW + IS+     + Y    T D  N
Sbjct: 367 FPRNIDEYNNNDLDTKKWNNKISALRALNDLYNVKNTLDSYN 408


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = -3

Query: 220 KNNFSAQHFDSLSTLDVNDKMATHD*FRFW 131
           + + S   ++SL  L   D+  T+D  R W
Sbjct: 242 RTDLSKDDYESLVHLYTRDQSETYDVLRSW 271


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,278
Number of Sequences: 438
Number of extensions: 2611
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16072521
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)