Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_B15
         (516 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0339 - 7623897-7625837                                           30   0.96 
03_03_0266 - 16014740-16015045,16015566-16015601,16015623-160156...    29   2.9  
09_02_0454 + 9514706-9515776                                           28   3.9  
03_02_0376 - 7883631-7883858,7883941-7884069,7884172-7884390,788...    28   3.9  
03_06_0549 - 34664552-34664901,34665013-34665109                       28   5.1  
09_04_0483 + 17979566-17980019,17980242-17980321,17980431-179808...    27   6.8  

>03_02_0339 - 7623897-7625837
          Length = 646

 Score = 30.3 bits (65), Expect = 0.96
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = +2

Query: 257 PSRSQVVGSQQQATVNQVSTVQTEVKTSVIQTNVKTQQPVMRQVIT 394
           PS S+  GSQQQA  NQ+ +V      +    N  T  P  R  +T
Sbjct: 335 PSSSEYPGSQQQAGKNQMQSVVQSAMAAKTTANGATVPPGCRHQLT 380


>03_03_0266 -
           16014740-16015045,16015566-16015601,16015623-16015643,
           16016331-16016591,16017504-16018985,16019834-16019989,
           16020154-16020277,16020399-16020615,16020877-16021774,
           16022947-16023291,16023371-16023565,16023751-16024453,
           16024866-16025467
          Length = 1781

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 18/64 (28%), Positives = 24/64 (37%), Gaps = 2/64 (3%)
 Frame = +1

Query: 208 YYNERTD--ENECS*SCATVQESGRRFTAAGYGEPSLDRTD*GENKRYTDQCENPAAGDE 381
           YY  R+D  E ECS  C+  Q   ++     YG    D  +   N   +   E      E
Sbjct: 197 YYTNRSDDEEEECSAYCSDRQVQHQQHNDHYYGPDEFDELESSYNPTISPTVEENVISKE 256

Query: 382 ASHH 393
            S H
Sbjct: 257 VSSH 260


>09_02_0454 + 9514706-9515776
          Length = 356

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -2

Query: 320 VRSRLGSP*PAAVNRRPDSWTVAQLYEHSFSSVRSL**AGCSTQ 189
           V   +G+  PAA  R P SWT  +  E SF+ + +   AGC  +
Sbjct: 134 VAEEMGAGSPAAAAREPASWT--ETMERSFARMDAEVIAGCRAE 175


>03_02_0376 -
           7883631-7883858,7883941-7884069,7884172-7884390,
           7884505-7884801,7886534-7886839
          Length = 392

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 8/76 (10%)
 Frame = +2

Query: 281 SQQQATVNQ-VSTVQTEVKTSVIQTNVKTQ-QPVMRQV---ITRQPVLVSNSKIGDKELL 445
           +Q  A VN+ + TV  + +T+V +   K     ++R V   + RQP+ VSNS +  + L 
Sbjct: 316 NQVDAVVNEALKTVNADERTAVDEAGFKKLLTDILRAVMMQLNRQPIFVSNSTVVHEPLF 375

Query: 446 VNQ---QTPGVIEKPS 484
            +     +P V   PS
Sbjct: 376 SSSAILSSPPVKSSPS 391


>03_06_0549 - 34664552-34664901,34665013-34665109
          Length = 148

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -1

Query: 228 IGALIIIGWLFDTAIICWFPCNSCWLPCI 142
           +G+      LFD    C   C +CW PCI
Sbjct: 14  VGSAAWSSGLFDCFDDCGLCCMTCWCPCI 42


>09_04_0483 +
           17979566-17980019,17980242-17980321,17980431-17980895,
           17981460-17981597,17982574-17982660,17982781-17982909,
           17983034-17983225,17983393-17983479,17983707-17984378
          Length = 767

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 179 AGSLATVAGYPVLSDYW 129
           AG  AT+ G+ +L DYW
Sbjct: 688 AGGAATITGHEILRDYW 704


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,103,487
Number of Sequences: 37544
Number of extensions: 241177
Number of successful extensions: 576
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 574
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)