Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_B14
(537 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc... 27 1.8
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc... 27 2.3
SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 26 3.1
SPCC1322.14c |vtc4||vacuolar transporter chaperone |Schizosaccha... 26 4.1
SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy... 26 4.1
SPAC13G7.03 |||up-frameshift suppressor3 family|Schizosaccharomy... 25 5.4
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ... 25 7.2
SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9 |Schizosacchar... 25 9.5
SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces pomb... 25 9.5
>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 781
Score = 27.1 bits (57), Expect = 1.8
Identities = 13/45 (28%), Positives = 16/45 (35%)
Frame = -2
Query: 383 NSFEFHRDRLVLLSSGRLVFLRISALGLLGFPVTLARSCCDIADC 249
N H RL + RI+A L P CC + DC
Sbjct: 709 NDLPMHMQRLFFCLANPTAEQRITAQEALNLPFVQEIECCSVDDC 753
>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 636
Score = 26.6 bits (56), Expect = 2.3
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Frame = +2
Query: 278 PASQESQVAQERKFAEKPNALKKVALDDLDEIQTNSIS-DGGFSWSNMLGMIMQMIFNPA 454
P+SQ+ K A P+ALK+ L+ +Q S D S SN+ Q + P
Sbjct: 37 PSSQQPPSTPNGKEAASPSALKQNVRPSLNSVQQTPASIDAVASSSNVSLQSQQPLSKPV 96
Query: 455 TTG-PNKS 475
+ PN++
Sbjct: 97 VSSKPNQT 104
>SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 356
Score = 26.2 bits (55), Expect = 3.1
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -3
Query: 217 YKWNMLGICKRVENCRTADKDNEHPTCCLVTHP*SRTR 104
YK N I KRV+N + +H C LV ++TR
Sbjct: 52 YKKNSSAIPKRVDNILLRSQKPKHIECLLVDSKITKTR 89
>SPCC1322.14c |vtc4||vacuolar transporter chaperone
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 721
Score = 25.8 bits (54), Expect = 4.1
Identities = 18/79 (22%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Frame = +2
Query: 128 NKAAGWVFVVLISSSTVLHTFAYPQH---VPLISQAPSSVRTHNSPQYHSNSLPASQESQ 298
+K GW+ + ++ F Q+ V +S+ VRT SP ++ +Q++
Sbjct: 133 DKHTGWILKPVFAARLNAKPFFKEQYDLLVVKLSKLYDFVRTRGSPIKGDSAAGGTQQNF 192
Query: 299 VAQERKFAEKPNALKKVAL 355
V Q K+ PN + ++ +
Sbjct: 193 VRQTTKYWVHPNNVTELKI 211
>SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 25.8 bits (54), Expect = 4.1
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = +2
Query: 263 HSN--SLPASQESQVAQERKFAEKPNALKKVALDDLDEIQTNSISDG 397
HSN S PA+Q++ + EKP++L V +++E ++G
Sbjct: 390 HSNLESTPAAQQTSEVEANNHQEKPSSLPAVEQINVNEENNTPETEG 436
>SPAC13G7.03 |||up-frameshift suppressor3 family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 278
Score = 25.4 bits (53), Expect = 5.4
Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Frame = +2
Query: 266 SNSLPASQESQVAQERKFAEKPNALK-KVALDDLDEIQTNSI 388
SNS ASQ S+ A ++K EK ++ K K+A D++ T+++
Sbjct: 238 SNST-ASQASENASDKKTKEKKSSGKQKIASKKKDQLTTDNV 278
>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1147
Score = 25.0 bits (52), Expect = 7.2
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +2
Query: 320 AEKPNALKKVALDDLDEIQTNSISDGGFS 406
AEK AL + AL+ + + N +SDG FS
Sbjct: 635 AEKNAALCEAALEKVPLAKHNKLSDGTFS 663
>SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 524
Score = 24.6 bits (51), Expect = 9.5
Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = +2
Query: 290 ESQVAQERKFAEKPNALKKVAL--DDLDEIQTNSISDGGF 403
E ++ +E + + A K++ L + LDE++ + DGGF
Sbjct: 53 EDEIDEENEDTYETAAEKRLRLAREYLDEVKNELVEDGGF 92
>SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 910
Score = 24.6 bits (51), Expect = 9.5
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +2
Query: 377 TNSISDGGFS-WSNMLGMIMQMIFNPATT 460
T IS G S W +L +M+M+ +PA+T
Sbjct: 118 TTIISRWGISTWPEVLPQLMEMLSSPAST 146
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,350,254
Number of Sequences: 5004
Number of extensions: 49566
Number of successful extensions: 160
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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