Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_B14
(537 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0758 - 27826787-27828178 33 0.19
02_01_0385 + 2783387-2783695,2784149-2785082,2785206-2785309,278... 29 1.8
06_03_0763 - 24405525-24405701,24406209-24406368,24406924-244070... 29 2.3
03_05_0629 + 26248960-26249236,26249766-26249894,26250291-262508... 29 2.3
12_02_0858 + 23740589-23743233,23743362-23743503,23744778-237449... 29 3.1
03_02_0024 + 5079690-5081351 29 3.1
08_02_1052 - 23962374-23963369 28 4.1
04_01_0213 - 2692253-2694562 27 9.5
02_05_0398 - 28644632-28644889,28644997-28645032,28645101-286453... 27 9.5
02_05_0113 - 25941189-25941519,25941630-25941925,25942238-259429... 27 9.5
>04_04_0758 - 27826787-27828178
Length = 463
Score = 32.7 bits (71), Expect = 0.19
Identities = 17/48 (35%), Positives = 28/48 (58%)
Frame = +2
Query: 263 HSNSLPASQESQVAQERKFAEKPNALKKVALDDLDEIQTNSISDGGFS 406
HS +PA +V +E EK A+++ A+ +L E+ S++DGG S
Sbjct: 404 HSEVVPAEAIQEVIEEAMLPEKGMAIRRRAM-ELGEVVRASVADGGSS 450
>02_01_0385 + 2783387-2783695,2784149-2785082,2785206-2785309,
2785402-2785486,2785517-2787578,2787732-2787753,
2788157-2788327,2791473-2791517,2792558-2793874,
2793962-2794012,2794090-2794188,2794352-2794504,
2794554-2794571
Length = 1789
Score = 29.5 bits (63), Expect = 1.8
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +2
Query: 212 LISQAPSSVRTHNSPQYHSNSLPASQESQVAQERKF-AEKPNAL 340
+ISQ SS+ S Q HS+S AS ES R F AE P+A+
Sbjct: 1593 MISQRDSSIGNQQSDQVHSSSEEASTES---SSRPFSAELPHAI 1633
>06_03_0763 -
24405525-24405701,24406209-24406368,24406924-24407005,
24407098-24407167,24407443-24407607,24407731-24407874,
24408467-24408715,24409006-24409221,24409306-24409398
Length = 451
Score = 29.1 bits (62), Expect = 2.3
Identities = 20/74 (27%), Positives = 36/74 (48%)
Frame = +2
Query: 83 QCFSDIDSGTRLRMCNKAAGWVFVVLISSSTVLHTFAYPQHVPLISQAPSSVRTHNSPQY 262
+CF + T L M N A ++ V S+ + T + +PL +A ++ +N P+
Sbjct: 367 KCFPQL---TVLSMANLVAETIWHVHRDGSSSIST-SETHSLPLTKEASDALPGYNQPRG 422
Query: 263 HSNSLPASQESQVA 304
H LP ++E+ A
Sbjct: 423 HMTLLPTTKEASDA 436
>03_05_0629 +
26248960-26249236,26249766-26249894,26250291-26250847,
26250933-26251250
Length = 426
Score = 29.1 bits (62), Expect = 2.3
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = -3
Query: 334 VWFFCEFPL-LGYLAFL*RWQGVAVIL 257
VWFFC PL L + +W+G+A IL
Sbjct: 329 VWFFCLLPLILPWTTMKLKWKGLACIL 355
>12_02_0858 +
23740589-23743233,23743362-23743503,23744778-23744990,
23745083-23745190,23745378-23745587,23745881-23746055,
23746197-23746264
Length = 1186
Score = 28.7 bits (61), Expect = 3.1
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Frame = +2
Query: 173 TVLHTFAYPQHVPLISQAPSSVRTHNSPQYHSNSLP-ASQESQVAQERKFAEKPNALKKV 349
TVL + P + S P +RTH Y ++ LP A++ S +P +++
Sbjct: 628 TVLSSIYQPDGYNINSTLPLRMRTHAREAYATSVLPQATRRSHQVNFDSAERRPQYVQQR 687
Query: 350 ALDDLDEIQTNSIS 391
LD D I +N +S
Sbjct: 688 GLD--DTINSNMLS 699
>03_02_0024 + 5079690-5081351
Length = 553
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -1
Query: 528 ILSLPMERVKLILYQCLSLLFGPVVAGLKIICIIIPSIFDH 406
+L P V+ IL CL L F +G+ + + P +FD+
Sbjct: 308 LLLRPTPAVRRILIACLGLQFFQQASGIDAVVLYSPRVFDN 348
>08_02_1052 - 23962374-23963369
Length = 331
Score = 28.3 bits (60), Expect = 4.1
Identities = 11/40 (27%), Positives = 24/40 (60%)
Frame = +2
Query: 131 KAAGWVFVVLISSSTVLHTFAYPQHVPLISQAPSSVRTHN 250
+ GWV ++L++ + A P+ + L++QAP ++ H+
Sbjct: 7 RLVGWVLLLLLAVAIAGAAAATPRQLFLVTQAPVTLTNHH 46
>04_01_0213 - 2692253-2694562
Length = 769
Score = 27.1 bits (57), Expect = 9.5
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +2
Query: 365 DEIQTNSISDGGFSWSNMLGMIMQMI 442
D I + S+ D SW +M+G MQ++
Sbjct: 99 DNITSYSLEDNILSWRDMIGFFMQVL 124
>02_05_0398 -
28644632-28644889,28644997-28645032,28645101-28645364,
28645439-28645522,28645718-28645798,28645888-28645965,
28646571-28646672,28646754-28646849,28646955-28647161,
28647246-28647493,28647577-28647773,28647997-28648112
Length = 588
Score = 27.1 bits (57), Expect = 9.5
Identities = 13/46 (28%), Positives = 26/46 (56%)
Frame = +2
Query: 329 PNALKKVALDDLDEIQTNSISDGGFSWSNMLGMIMQMIFNPATTGP 466
P + K VAL + + N+IS G + ++ + +++ ++FN T P
Sbjct: 423 PKSGKMVALGTIQKTDKNAISVDGQALNDCVDILVNIVFNQHTIIP 468
>02_05_0113 -
25941189-25941519,25941630-25941925,25942238-25942942,
25943030-25943131,25943352-25943679,25944170-25944294,
25944388-25944453,25945046-25945109,25945739-25945821,
25945917-25945943
Length = 708
Score = 27.1 bits (57), Expect = 9.5
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +1
Query: 406 VVKYARYDNANDFQPCHYGTE*ERQTLIQNQFHPLHGQT*YRW 534
V Y Y N + GT+ E+ + +++ PLH QT W
Sbjct: 7 VSTYCGYRELNAYNRIFLGTDVEKTPIGRSRCSPLHHQTKQEW 49
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,280,729
Number of Sequences: 37544
Number of extensions: 317562
Number of successful extensions: 876
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 876
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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