Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_B14
         (537 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z29443-10|CAA82578.2|  315|Caenorhabditis elegans Hypothetical p...    32   0.23 
AB121091-1|BAD14918.1|  315|Caenorhabditis elegans T-box transcr...    32   0.23 
Z98866-26|CAM33505.1|  559|Caenorhabditis elegans Hypothetical p...    29   2.1  
Z81129-4|CAB03405.1|  330|Caenorhabditis elegans Hypothetical pr...    29   2.1  
AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical ...    29   2.1  
U00065-2|AAL27237.1|  672|Caenorhabditis elegans Prion-like-(q/n...    28   4.9  
U21323-12|AAA62554.2|  354|Caenorhabditis elegans Hypothetical p...    27   8.6  
AC017117-1|AAF16618.1|  338|Caenorhabditis elegans Hypothetical ...    27   8.6  

>Z29443-10|CAA82578.2|  315|Caenorhabditis elegans Hypothetical
           protein T07C4.2 protein.
          Length = 315

 Score = 32.3 bits (70), Expect = 0.23
 Identities = 11/37 (29%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
 Frame = -2

Query: 422 RAYLTTRNPRQR-WNSFEFHRDRLVLLSSGRLVFLRI 315
           + Y+T R  + + WN F +H++ +++  SGR +F ++
Sbjct: 4   QVYVTLREDQDKLWNLFHYHKNEMIVTKSGRKMFPKL 40


>AB121091-1|BAD14918.1|  315|Caenorhabditis elegans T-box
           transcription factor TBX-8 protein.
          Length = 315

 Score = 32.3 bits (70), Expect = 0.23
 Identities = 11/37 (29%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
 Frame = -2

Query: 422 RAYLTTRNPRQR-WNSFEFHRDRLVLLSSGRLVFLRI 315
           + Y+T R  + + WN F +H++ +++  SGR +F ++
Sbjct: 4   QVYVTLREDQDKLWNLFHYHKNEMIVTKSGRKMFPKL 40


>Z98866-26|CAM33505.1|  559|Caenorhabditis elegans Hypothetical
           protein Y49E10.29 protein.
          Length = 559

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 17/59 (28%), Positives = 28/59 (47%)
 Frame = +2

Query: 200 QHVPLISQAPSSVRTHNSPQYHSNSLPASQESQVAQERKFAEKPNALKKVALDDLDEIQ 376
           Q VP+I QAP +       Q  +++ PA Q   + Q+ + A+K  A    A   +  +Q
Sbjct: 18  QQVPVIQQAPPNSPAQQQQQAQAHAPPA-QAKPIVQQTQPAQKQQAQAPPAAQQIPVVQ 75


>Z81129-4|CAB03405.1|  330|Caenorhabditis elegans Hypothetical
           protein T23F1.6 protein.
          Length = 330

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +1

Query: 157 PYQQFDSSPHVCISPTCSTYI-TGTQQCQNA*QSAISQQLLASVTGKPSS 303
           PYQQ       C +P CS    T  QQCQN+ Q++ +Q +   V   P +
Sbjct: 210 PYQQTQCQQQ-C-APQCSQQTSTNCQQCQNSCQNSNTQTITIYVQASPQT 257


>AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical
            protein Y32H12A.8 protein.
          Length = 3901

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = +2

Query: 212  LISQAPSSVRTHNSPQYHSNSLPASQESQVAQERKFAEKPNALKKVA-LDDLDEIQTNSI 388
            LIS   S +   + P  HS+ +   +ES+   E          ++++ LD+ DE + NS+
Sbjct: 2839 LISSESSCLSESDDPSVHSSQVSCGEESEELPESPEKSPIKIPRRISELDENDESRRNSL 2898

Query: 389  SDG 397
              G
Sbjct: 2899 RKG 2901


>U00065-2|AAL27237.1|  672|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 25
           protein.
          Length = 672

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +1

Query: 175 SSPHVCISPTCSTYITGTQQCQNA*QSAISQQLLASVTGKP 297
           S+  VCIS  C  Y++   QC  + Q   + Q ++S+   P
Sbjct: 385 STNQVCISNQCYNYVSIGSQCVGSQQCLSNSQCISSICQCP 425


>U21323-12|AAA62554.2|  354|Caenorhabditis elegans Hypothetical
           protein C45G9.11 protein.
          Length = 354

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -2

Query: 128 YTSLISYQNRYH*NTVHTVYHEVSCIFFTCESACCLSEGLPR 3
           Y  ++ ++NR   N V  ++ +V       E  CCLS  L R
Sbjct: 157 YQKVVLFRNRMKANKVAPIHTKVQSRHLELEPLCCLSSCLVR 198


>AC017117-1|AAF16618.1|  338|Caenorhabditis elegans Hypothetical
           protein F43C11.8 protein.
          Length = 338

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 151 RCPYQQFDSSPHVCISPTCST 213
           +C   Q++ +  VCI PTCS+
Sbjct: 105 KCASHQYNFAEFVCIEPTCSS 125


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,059,575
Number of Sequences: 27780
Number of extensions: 278820
Number of successful extensions: 999
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 907
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 999
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1070714938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)