Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_B13
         (244 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0180 - 16031366-16031445,16031950-16032022,16032148-160321...    28   1.2  
03_02_1012 + 13207907-13207990,13209196-13209280,13209402-132101...    27   1.6  
06_03_0485 + 21330547-21330684,21331391-21331471,21331610-213316...    26   4.9  
03_05_0449 - 24437994-24438157,24438265-24438383,24438489-24438760     26   4.9  
03_04_0020 - 16504322-16504654,16504758-16504785,16504937-165049...    26   4.9  
03_01_0006 + 65675-65808,66385-66457,68290-68526,68648-68785,688...    25   6.4  
04_03_0832 + 20139299-20139520,20139822-20141114,20142697-201428...    25   8.5  

>02_03_0180 -
           16031366-16031445,16031950-16032022,16032148-16032186,
           16032434-16032715,16032790-16032948,16033034-16033390,
           16033482-16033622,16033919-16034045,16034121-16034263,
           16034740-16034917,16035019-16035552,16035628-16035812,
           16036551-16036637,16036710-16036850,16036896-16037175,
           16037944-16038020,16038326-16039138,16039292-16039801,
           16039926-16040056,16040192-16040246,16040364-16040564,
           16040640-16040909,16041103-16041184,16041271-16041434,
           16041532-16041690,16041762-16042083,16042158-16042544,
           16042811-16042999,16043233-16043317,16043458-16043753,
           16043862-16043965,16044484-16044513,16044602-16044817,
           16044923-16045540,16045718-16045993,16046619-16046762,
           16046854-16046962,16047291-16047475,16047557-16047670,
           16048348-16048479,16048929-16049249,16049424-16049891,
           16054482-16054547,16054691-16054828,16054917-16055015,
           16057098-16057194,16057661-16057761,16057858-16058085,
           16059175-16059381,16059451-16059571,16059921-16059988,
           16060148-16060213,16060396-16060509,16060949-16061300,
           16063571-16063663,16063764-16063922,16064224-16064287,
           16064385-16064577,16064673-16064710,16065510-16065645,
           16065726-16065914,16065994-16066095,16067660-16067777,
           16067861-16067964,16070338-16070346,16071428-16071475,
           16071581-16071676,16072430-16072533,16073964-16074045,
           16076573-16076601,16076708-16076963
          Length = 4246

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 15/28 (53%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
 Frame = -3

Query: 227 KFEFRMFLDKL---SERCSVTERYCGLS 153
           +FE    + KL   S RC VT RYCGLS
Sbjct: 689 RFEKLQVVTKLYPKSTRCDVTLRYCGLS 716


>03_02_1012 + 13207907-13207990,13209196-13209280,13209402-13210186,
            13210262-13210462,13210580-13210690,13211105-13211487,
            13211594-13211702,13211786-13211866,13212088-13212156,
            13212379-13212467,13212619-13212780,13212859-13212916,
            13213143-13213373,13213516-13213662,13213779-13214333,
            13214562-13214819,13215096-13215203,13215760-13215854,
            13215946-13216102,13216466-13216666,13217542-13217670,
            13218292-13218567
          Length = 1457

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +1

Query: 13   KWLVVDGKLKMVDVILRRINAES 81
            K L   GKL+ +D++LRR+ AE+
Sbjct: 1133 KMLTDSGKLQTLDILLRRLRAEN 1155


>06_03_0485 +
           21330547-21330684,21331391-21331471,21331610-21331683,
           21331767-21331842,21332014-21332081,21332803-21332926,
           21333264-21333362,21333679-21333815,21334166-21334247,
           21334595-21334657,21335272-21335319,21335452-21335514,
           21335840-21335923,21336098-21336118
          Length = 385

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 15/58 (25%), Positives = 32/58 (55%)
 Frame = -3

Query: 212 MFLDKLSERCSVTERYCGLSVNPVI*TSVGLLSTRISSKCPPGILSAFIRRNITSTIF 39
           + ++KL++R  +  ++  + ++ VI TSV +    +  KC   +LS F+   + S I+
Sbjct: 109 LMVEKLAQR-KLISKHVVILLHIVITTSVLVYPVVVILKCDSAVLSGFVLMFLASIIW 165


>03_05_0449 - 24437994-24438157,24438265-24438383,24438489-24438760
          Length = 184

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = -1

Query: 133 LVWDYYRHVSPRSVRPVYSPHLYDAISRPPFLIYHQRRAILVLV 2
           LVW Y      RS+   Y P  Y A++ P F+I      ++V V
Sbjct: 70  LVWAYMPERCLRSLGITYYPSRYWALAVPSFVIVATALCMVVYV 113


>03_04_0020 -
           16504322-16504654,16504758-16504785,16504937-16504989,
           16505377-16505463,16505636-16505704,16506071-16506145,
           16507040-16507210,16507693-16507793,16508062-16508139,
           16508492-16508648,16508737-16509006,16509369-16509485,
           16510250-16510339,16510417-16510629,16510742-16510891,
           16511929-16512342
          Length = 801

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = -1

Query: 88  PVYSPHLYDAISRPPFLIYHQRRAILVL 5
           P Y PH+Y  +  P  +  H R   L +
Sbjct: 71  PSYQPHVYGRLDPPALIPLHMREVALAV 98


>03_01_0006 +
           65675-65808,66385-66457,68290-68526,68648-68785,
           68871-69005,69131-69310,69495-69701,69821-69943,
           70240-70359,70758-70880,72067-72171,72254-72398,
           73443-73607,73669-73907,74452-74484,74977-75058,
           75200-75360,75739-75951,76789-76971,77051-77220,
           77375-77474
          Length = 1021

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -2

Query: 126 GIIIDTYLLEVSARYTLRIYTTQYHVHHF 40
           G+II  YL   +  +    Y TQ+ VH F
Sbjct: 775 GVIIGAYLAVTTVLFFWAAYKTQFFVHLF 803


>04_03_0832 +
           20139299-20139520,20139822-20141114,20142697-20142822,
           20143322-20143442,20144213-20144481
          Length = 676

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -2

Query: 117 IDTYLLEVSARYTLRIYTTQYH 52
           + T  + +S  YTL I+T+ YH
Sbjct: 167 LSTATINLSQEYTLAIHTSSYH 188


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,334,109
Number of Sequences: 37544
Number of extensions: 107653
Number of successful extensions: 223
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 14,793,348
effective HSP length: 59
effective length of database: 12,578,252
effective search space used: 264143292
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)