Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_B13
         (244 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L23645-9|AAK26134.1| 1226|Caenorhabditis elegans Hypothetical pr...    26   4.1  
U13070-6|AAC46643.1|  470|Caenorhabditis elegans Hypothetical pr...    25   5.4  
Z68009-3|CAA92005.1|  817|Caenorhabditis elegans Hypothetical pr...    25   7.1  
AC006617-5|AAF39775.1|  325|Caenorhabditis elegans Serpentine re...    25   7.1  
Z69661-3|CAA93490.1|  293|Caenorhabditis elegans Hypothetical pr...    25   9.4  

>L23645-9|AAK26134.1| 1226|Caenorhabditis elegans Hypothetical protein
            F54F2.1 protein.
          Length = 1226

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 116  STRISSKCPPGILSAFIRRNITSTIFNLP 30
            +T +  K P G +S+     +TST +NLP
Sbjct: 1101 NTLVDEKNPGGDISSLALARVTSTKYNLP 1129


>U13070-6|AAC46643.1|  470|Caenorhabditis elegans Hypothetical
           protein F01F1.9 protein.
          Length = 470

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = -3

Query: 164 CGLSVNPVI*TSVGLLSTRISSKCPPGILSAFIRRNITSTIFNLPSTTSHFSPR 3
           CG +V P++ T +GL +  +   CP   + +      TS+I+   +  S F  R
Sbjct: 410 CGSTVGPILATKLGLQTVDVG--CPQLAMHSIREFADTSSIYQATTLYSTFYER 461


>Z68009-3|CAA92005.1|  817|Caenorhabditis elegans Hypothetical
           protein R09A8.3 protein.
          Length = 817

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -2

Query: 177 NGTLLRSKRQPCNID 133
           N  LLR+KR+PC +D
Sbjct: 463 NEELLRTKREPCPVD 477


>AC006617-5|AAF39775.1|  325|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 65 protein.
          Length = 325

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 10/38 (26%), Positives = 23/38 (60%)
 Frame = -1

Query: 172 NAIAV*ASTL*YRLVWDYYRHVSPRSVRPVYSPHLYDA 59
           + +A+   TL + ++  Y++H + + ++P  SP+  DA
Sbjct: 190 STVAMFLVTLYFPMIGSYWKHQAMKLLKPHVSPNTSDA 227


>Z69661-3|CAA93490.1|  293|Caenorhabditis elegans Hypothetical
           protein F48F7.5 protein.
          Length = 293

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -2

Query: 153 RQPCNID*CGIIIDTYLLEVS 91
           +QP  I+ CG ++D Y L+ S
Sbjct: 13  QQPLKIETCGTVMDMYKLQCS 33


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,440,364
Number of Sequences: 27780
Number of extensions: 94315
Number of successful extensions: 199
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 12,740,198
effective HSP length: 60
effective length of database: 11,073,398
effective search space used: 221467960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)