Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_B13
         (244 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    20   3.8  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    20   5.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              19   6.7  

>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 20.2 bits (40), Expect = 3.8
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = -1

Query: 121 YYRHVSPRSVRPVYSPHLYDAISRPPFLIY 32
           +YR    R++R ++   L   I   PF  Y
Sbjct: 142 HYRSGLKRAIRSIFGAWLIALIFAMPFATY 171


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 19.8 bits (39), Expect = 5.0
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -2

Query: 99  EVSARYTLRIYTTQY 55
           EV+  YT+ +Y  QY
Sbjct: 77  EVNMDYTITMYLNQY 91


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 19.4 bits (38), Expect = 6.7
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +1

Query: 67   INAESIPGGHFEEIRVDN 120
            I AE  P G    IRVD+
Sbjct: 970  ITAEEAPSGPPTSIRVDD 987


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,347
Number of Sequences: 438
Number of extensions: 1270
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used:  4149981
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)