Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_B12
(380 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 27 1.3
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 26 2.3
SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces pomb... 25 3.0
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po... 25 3.0
SPAC5D6.13 ||SPAPJ735.02c|Golgi phosphoprotein 3 family|Schizosa... 25 4.0
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 24 7.0
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 24 7.0
SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr... 24 7.0
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 24 9.3
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 24 9.3
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 26.6 bits (56), Expect = 1.3
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -2
Query: 274 KAYLLYIYDLHFGIYHLWALNLLVSLVNHL 185
K Y+L+ +H +Y WA L++ +NHL
Sbjct: 1441 KNYVLFC--IHHVLYDAWAFQLIMDDINHL 1468
Score = 23.8 bits (49), Expect = 9.3
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -2
Query: 274 KAYLLYIYDLHFGIYHLWALNLLVS 200
K + L L GIY W+L+LL++
Sbjct: 3456 KGFFLVTVTLFHGIYDGWSLDLLLN 3480
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 25.8 bits (54), Expect = 2.3
Identities = 10/36 (27%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = +3
Query: 12 RSRDEIRPRDE-IRSRDEIKPKDELTSKDDNRSKDV 116
R D + +E +++++ +KP+DE T ++ NR ++
Sbjct: 74 RIHDHLLMEEEYVQNQERLKPQDERTQEERNRVDEI 109
>SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 394
Score = 25.4 bits (53), Expect = 3.0
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
Frame = +3
Query: 66 KPKDELTSKDDNRSKD---VVSNERRISS 143
KPKDE+TS N S+ +VSN R+ S
Sbjct: 66 KPKDEVTSMKANGSRQSSCIVSNARKRQS 94
>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1313
Score = 25.4 bits (53), Expect = 3.0
Identities = 16/58 (27%), Positives = 30/58 (51%)
Frame = -2
Query: 250 DLHFGIYHLWALNLLVSLVNHLWMIYHHHEVLYYL*DEILLSFETTSFDLLSSLEVNS 77
+ + I L AL+ LV H +I+ H V+ Y +++++E++ D+L NS
Sbjct: 704 ETYIAIAALAALSDASPLVRHELVIFLSHFVVNYKKQLMVVAYESSLADILEKKNHNS 761
>SPAC5D6.13 ||SPAPJ735.02c|Golgi phosphoprotein 3
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 337
Score = 25.0 bits (52), Expect = 4.0
Identities = 18/61 (29%), Positives = 31/61 (50%)
Frame = -2
Query: 223 WALNLLVSLVNHLWMIYHHHEVLYYL*DEILLSFETTSFDLLSSLEVNSSFGLISSLDLI 44
+A N+L + +++L Y E + DE+L F FDL +S V ++ + S +L
Sbjct: 253 YAANVLENALDNL--NYEDREKAFSRVDELLCDFSQWPFDLHASSSVGANLPELISEELS 310
Query: 43 S 41
S
Sbjct: 311 S 311
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 24.2 bits (50), Expect = 7.0
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 24 EIRPRDEIRSRDEIKPKDELTSKDDNRSK 110
E+R +IR +E KD + + DNR+K
Sbjct: 1218 EVRILPKIRQNEEFSLKDGVWNLTDNRTK 1246
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 24.2 bits (50), Expect = 7.0
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -2
Query: 124 FETTSFDLLSSLEVNSSFGLIS 59
F++T+FD S+EVN G +S
Sbjct: 218 FDSTTFDRQLSIEVNQPVGAMS 239
>SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 506
Score = 24.2 bits (50), Expect = 7.0
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -2
Query: 208 LVSLVNHLWMIYHHHEVLYYL*DEILLSFETTSFD 104
L+SLV+ + ++L L DE+ L +ET FD
Sbjct: 213 LLSLVDERNEMQERLDILTNLLDELTLLYETDKFD 247
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 23.8 bits (49), Expect = 9.3
Identities = 12/43 (27%), Positives = 21/43 (48%)
Frame = +3
Query: 21 DEIRPRDEIRSRDEIKPKDELTSKDDNRSKDVVSNERRISS*R 149
DE++ R + + K K++ TSK N + + E + S R
Sbjct: 623 DELQKRLQTLEEENNKAKEDSTSKTSNLLEQLKMTEAEVDSLR 665
>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
domain|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1811
Score = 23.8 bits (49), Expect = 9.3
Identities = 12/38 (31%), Positives = 17/38 (44%)
Frame = +3
Query: 12 RSRDEIRPRDEIRSRDEIKPKDELTSKDDNRSKDVVSN 125
R DEI D I + + E+ K+ KD+ SN
Sbjct: 38 RVSDEIDEHDSIPEQSNTEKSIEINDKNLEAEKDIESN 75
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,140,613
Number of Sequences: 5004
Number of extensions: 18931
Number of successful extensions: 83
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 124270298
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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