Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_B12
         (380 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,353...    28   2.2  
08_02_1030 - 23786760-23787812,23787891-23788319,23788410-237885...    28   2.9  
01_06_0116 - 26595570-26596607,26596964-26598353,26599386-265999...    27   3.8  
03_01_0373 - 2904914-2904949,2905030-2905144,2906446-2906534,290...    27   6.6  
02_03_0097 + 15166077-15166349,15166623-15166694,15166715-151671...    26   8.7  

>09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,
            3536083-3536226,3536974-3537375,3537499-3537721,
            3537830-3542368,3542480-3542599,3543005-3543038,
            3543922-3544102,3544198-3544815,3545022-3551098,
            3551139-3551304,3551508-3551614,3552056-3552178,
            3553417-3553642
          Length = 5100

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +3

Query: 39   DEIRSRDEIKPKDELTSKDDNRSKDVVSNERRIS 140
            D+++ + E  PKDE  SK+ +  +  V N  R+S
Sbjct: 4481 DQLQKQHEENPKDETLSKNASMQRSAVENFVRVS 4514


>08_02_1030 -
           23786760-23787812,23787891-23788319,23788410-23788526,
           23788820-23789083
          Length = 620

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 304 KPEKIIENDDKIQEEKKDLPSAPEG 378
           +PE + E DD+ Q   +D+PS  EG
Sbjct: 325 EPEPVAEQDDEHQRGAEDIPSLVEG 349


>01_06_0116 -
           26595570-26596607,26596964-26598353,26599386-26599923,
           26600562-26601453
          Length = 1285

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +3

Query: 6   RIRSRDEIRPRDEIRSRD-EIKPKDELTSKDDNRSKDV 116
           R  S  E  P   +R RD + +P + L  KDD +S+D+
Sbjct: 500 RTSSGRERTPASRLRDRDADNRPSERLKQKDDLQSRDM 537


>03_01_0373 -
           2904914-2904949,2905030-2905144,2906446-2906534,
           2906670-2906889,2907921-2907985,2908619-2908879,
           2909204-2909417,2910643-2910698,2910891-2910947,
           2911043-2911115,2912711-2913225
          Length = 566

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = +3

Query: 6   RIRSRDEIRPRDEIRSRDEIKPKDELTSKDDNRSKD 113
           R RS  E R RD  R RDE   + E     + RS+D
Sbjct: 85  RHRSSRERRDRDRDRDRDEKDREKERDKDKERRSRD 120


>02_03_0097 +
           15166077-15166349,15166623-15166694,15166715-15167161,
           15167579-15167794,15167873-15168213,15168329-15168947
          Length = 655

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +3

Query: 6   RIRSRDEIRPRDEIRSRDEIKPKDELTSKDDNR 104
           R+R   + +PR E R+++++   DE T+ +  R
Sbjct: 259 RVRGFQKTKPRQEWRAKNQVLVADEATADEAKR 291


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,761,903
Number of Sequences: 37544
Number of extensions: 102711
Number of successful extensions: 344
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 328
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 343
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 624784784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)