Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_B12
(380 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC036233-1|AAH36233.1| 946|Homo sapiens WDR66 protein protein. 30 2.9
BC028421-1|AAH28421.1| 1154|Homo sapiens WD repeat domain 66 pro... 30 2.9
BC101678-1|AAI01679.1| 342|Homo sapiens C1orf113 protein protein. 29 3.8
BC101676-1|AAI01677.1| 342|Homo sapiens C1orf113 protein protein. 29 3.8
BC048273-1|AAH48273.1| 267|Homo sapiens C1orf113 protein protein. 29 3.8
BC036763-1|AAH36763.1| 228|Homo sapiens C1orf113 protein protein. 29 3.8
BC034980-1|AAH34980.1| 603|Homo sapiens Unknown (protein for IM... 29 3.8
AK056459-1|BAB71191.1| 331|Homo sapiens protein ( Homo sapiens ... 29 3.8
AK026591-1|BAB15504.1| 207|Homo sapiens protein ( Homo sapiens ... 29 3.8
AK097102-1|BAC04951.1| 297|Homo sapiens protein ( Homo sapiens ... 29 5.0
BC132963-1|AAI32964.1| 546|Homo sapiens PRP38 pre-mRNA processi... 28 8.7
BC130346-1|AAI30347.1| 546|Homo sapiens PRP38 pre-mRNA processi... 28 8.7
BC051803-1|AAH51803.1| 503|Homo sapiens LEM domain containing 2... 28 8.7
BC024275-1|AAH24275.1| 465|Homo sapiens Unknown (protein for IM... 28 8.7
BC016296-1|AAH16296.1| 474|Homo sapiens Unknown (protein for IM... 28 8.7
BC007757-1|AAH07757.1| 465|Homo sapiens PRPF38B protein protein. 28 8.7
AL591719-6|CAH72070.1| 435|Homo sapiens PRP38 pre-mRNA processi... 28 8.7
AL591719-5|CAH72069.1| 546|Homo sapiens PRP38 pre-mRNA processi... 28 8.7
AL160171-7|CAI12934.1| 435|Homo sapiens PRP38 pre-mRNA processi... 28 8.7
AL160171-6|CAI12933.1| 546|Homo sapiens PRP38 pre-mRNA processi... 28 8.7
AL158049-2|CAI21527.2| 503|Homo sapiens LEM domain containing 2... 28 8.7
AK074959-1|BAC11316.1| 503|Homo sapiens protein ( Homo sapiens ... 28 8.7
AK001192-1|BAA91546.1| 546|Homo sapiens protein ( Homo sapiens ... 28 8.7
AF269088-1|AAK27326.1| 1011|Homo sapiens breast cancer antigen N... 28 8.7
>BC036233-1|AAH36233.1| 946|Homo sapiens WDR66 protein protein.
Length = 946
Score = 29.9 bits (64), Expect = 2.9
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 21 DEIRPRDEIRSRDEIKPKDELTSKDDNRSKDVVSNERR 134
D+I P ++ S E +P EL K D +D + ERR
Sbjct: 167 DQISPEEQQISSPERQPSGELEEKTDRMPQDELGQERR 204
>BC028421-1|AAH28421.1| 1154|Homo sapiens WD repeat domain 66
protein.
Length = 1154
Score = 29.9 bits (64), Expect = 2.9
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 21 DEIRPRDEIRSRDEIKPKDELTSKDDNRSKDVVSNERR 134
D+I P ++ S E +P EL K D +D + ERR
Sbjct: 167 DQISPEEQQISSPERQPSGELEEKTDRMPQDELGQERR 204
>BC101678-1|AAI01679.1| 342|Homo sapiens C1orf113 protein protein.
Length = 342
Score = 29.5 bits (63), Expect = 3.8
Identities = 11/34 (32%), Positives = 23/34 (67%)
Frame = +3
Query: 18 RDEIRPRDEIRSRDEIKPKDELTSKDDNRSKDVV 119
R+E+ P++ + S++E+ K+EL K++ K+ V
Sbjct: 259 REEVLPKEGVASKEEVTLKEELPPKEEVAPKEEV 292
>BC101676-1|AAI01677.1| 342|Homo sapiens C1orf113 protein protein.
Length = 342
Score = 29.5 bits (63), Expect = 3.8
Identities = 11/34 (32%), Positives = 23/34 (67%)
Frame = +3
Query: 18 RDEIRPRDEIRSRDEIKPKDELTSKDDNRSKDVV 119
R+E+ P++ + S++E+ K+EL K++ K+ V
Sbjct: 259 REEVLPKEGVASKEEVTLKEELPPKEEVAPKEEV 292
>BC048273-1|AAH48273.1| 267|Homo sapiens C1orf113 protein protein.
Length = 267
Score = 29.5 bits (63), Expect = 3.8
Identities = 11/34 (32%), Positives = 23/34 (67%)
Frame = +3
Query: 18 RDEIRPRDEIRSRDEIKPKDELTSKDDNRSKDVV 119
R+E+ P++ + S++E+ K+EL K++ K+ V
Sbjct: 124 REEVLPKEGVASKEEVTLKEELPPKEEVAPKEEV 157
>BC036763-1|AAH36763.1| 228|Homo sapiens C1orf113 protein protein.
Length = 228
Score = 29.5 bits (63), Expect = 3.8
Identities = 11/34 (32%), Positives = 23/34 (67%)
Frame = +3
Query: 18 RDEIRPRDEIRSRDEIKPKDELTSKDDNRSKDVV 119
R+E+ P++ + S++E+ K+EL K++ K+ V
Sbjct: 85 REEVLPKEGVASKEEVTLKEELPPKEEVAPKEEV 118
>BC034980-1|AAH34980.1| 603|Homo sapiens Unknown (protein for
IMAGE:4824581) protein.
Length = 603
Score = 29.5 bits (63), Expect = 3.8
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 12 RSRDEIRPRDEIRSRDEIKPKDELTSKDDNRSKD 113
RSR + RD RSR K +D S+ N+++D
Sbjct: 411 RSRSPNKARDRSRSRSPYKARDRSRSRSPNKARD 444
Score = 29.5 bits (63), Expect = 3.8
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 12 RSRDEIRPRDEIRSRDEIKPKDELTSKDDNRSKD 113
RSR + RD RSR K +D S+ N+++D
Sbjct: 447 RSRSPYKARDRSRSRSPNKARDHSRSRSPNKARD 480
Score = 29.1 bits (62), Expect = 5.0
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +3
Query: 6 RIRSRDEIRPRDEIRSRDEIKPKDELTSKDDNRSKD 113
R RSR + RD RSR K +D S+ N+++D
Sbjct: 433 RSRSRSPNKARDCSRSRSPYKARDRSRSRSPNKARD 468
>AK056459-1|BAB71191.1| 331|Homo sapiens protein ( Homo sapiens
cDNA FLJ31897 fis, clone NT2RP7004080, weakly similar to
CELL SURFACE GLYCOPROTEIN 1 PRECURSOR. ).
Length = 331
Score = 29.5 bits (63), Expect = 3.8
Identities = 11/34 (32%), Positives = 23/34 (67%)
Frame = +3
Query: 18 RDEIRPRDEIRSRDEIKPKDELTSKDDNRSKDVV 119
R+E+ P++ + S++E+ K+EL K++ K+ V
Sbjct: 259 REEVLPKEGVASKEEVTLKEELPPKEEVAPKEEV 292
>AK026591-1|BAB15504.1| 207|Homo sapiens protein ( Homo sapiens
cDNA: FLJ22938 fis, clone KAT08023. ).
Length = 207
Score = 29.5 bits (63), Expect = 3.8
Identities = 11/34 (32%), Positives = 23/34 (67%)
Frame = +3
Query: 18 RDEIRPRDEIRSRDEIKPKDELTSKDDNRSKDVV 119
R+E+ P++ + S++E+ K+EL K++ K+ V
Sbjct: 64 REEVLPKEGVASKEEVTLKEELPPKEEVAPKEEV 97
>AK097102-1|BAC04951.1| 297|Homo sapiens protein ( Homo sapiens
cDNA FLJ39783 fis, clone SPLEN2002223. ).
Length = 297
Score = 29.1 bits (62), Expect = 5.0
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 21 DEIRPRDEIRSRDEIKPKDELTSKDDNRSKDVVSNERR 134
D+I P ++ S E +P EL K D +D + ERR
Sbjct: 89 DQISPEEQQISSPERQPSGELEEKTDRIPQDELGQERR 126
>BC132963-1|AAI32964.1| 546|Homo sapiens PRP38 pre-mRNA processing
factor 38 (yeast) domain containing B protein.
Length = 546
Score = 28.3 bits (60), Expect = 8.7
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +3
Query: 6 RIRSRDEIRPRD-EIRSRDEIKPKDELTSKDDNRSKD 113
R + R+ R R E RSR E++ K KDD R +D
Sbjct: 378 REKERERSRERSKEQRSRGEVEEKKHKEDKDDRRHRD 414
>BC130346-1|AAI30347.1| 546|Homo sapiens PRP38 pre-mRNA processing
factor 38 (yeast) domain containing B protein.
Length = 546
Score = 28.3 bits (60), Expect = 8.7
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +3
Query: 6 RIRSRDEIRPRD-EIRSRDEIKPKDELTSKDDNRSKD 113
R + R+ R R E RSR E++ K KDD R +D
Sbjct: 378 REKERERSRERSKEQRSRGEVEEKKHKEDKDDRRHRD 414
>BC051803-1|AAH51803.1| 503|Homo sapiens LEM domain containing 2
protein.
Length = 503
Score = 28.3 bits (60), Expect = 8.7
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +3
Query: 12 RSRDEIRPRDEIRSRDEIKPKDELTSKDDNRSKD 113
R R E R RDE R R+E +P+ E +++ R ++
Sbjct: 37 RLRGEARLRDEERLREEARPRGEERLREEARLRE 70
>BC024275-1|AAH24275.1| 465|Homo sapiens Unknown (protein for
IMAGE:4122390) protein.
Length = 465
Score = 28.3 bits (60), Expect = 8.7
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +3
Query: 6 RIRSRDEIRPRD-EIRSRDEIKPKDELTSKDDNRSKD 113
R + R+ R R E RSR E++ K KDD R +D
Sbjct: 378 REKERERSRERSKEQRSRGEVEEKKHKEDKDDRRHRD 414
>BC016296-1|AAH16296.1| 474|Homo sapiens Unknown (protein for
IMAGE:3538108) protein.
Length = 474
Score = 28.3 bits (60), Expect = 8.7
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +3
Query: 6 RIRSRDEIRPRD-EIRSRDEIKPKDELTSKDDNRSKD 113
R + R+ R R E RSR E++ K KDD R +D
Sbjct: 378 REKERERSRERSKEQRSRGEVEEKKHKEDKDDRRHRD 414
>BC007757-1|AAH07757.1| 465|Homo sapiens PRPF38B protein protein.
Length = 465
Score = 28.3 bits (60), Expect = 8.7
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +3
Query: 6 RIRSRDEIRPRD-EIRSRDEIKPKDELTSKDDNRSKD 113
R + R+ R R E RSR E++ K KDD R +D
Sbjct: 378 REKERERSRERSKEQRSRGEVEEKKHKEDKDDRRHRD 414
>AL591719-6|CAH72070.1| 435|Homo sapiens PRP38 pre-mRNA processing
factor 38 (yeast) domain containing B protein.
Length = 435
Score = 28.3 bits (60), Expect = 8.7
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +3
Query: 6 RIRSRDEIRPRD-EIRSRDEIKPKDELTSKDDNRSKD 113
R + R+ R R E RSR E++ K KDD R +D
Sbjct: 267 REKERERSRERSKEQRSRGEVEEKKHKEDKDDRRHRD 303
>AL591719-5|CAH72069.1| 546|Homo sapiens PRP38 pre-mRNA processing
factor 38 (yeast) domain containing B protein.
Length = 546
Score = 28.3 bits (60), Expect = 8.7
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +3
Query: 6 RIRSRDEIRPRD-EIRSRDEIKPKDELTSKDDNRSKD 113
R + R+ R R E RSR E++ K KDD R +D
Sbjct: 378 REKERERSRERSKEQRSRGEVEEKKHKEDKDDRRHRD 414
>AL160171-7|CAI12934.1| 435|Homo sapiens PRP38 pre-mRNA processing
factor 38 (yeast) domain containing B protein.
Length = 435
Score = 28.3 bits (60), Expect = 8.7
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +3
Query: 6 RIRSRDEIRPRD-EIRSRDEIKPKDELTSKDDNRSKD 113
R + R+ R R E RSR E++ K KDD R +D
Sbjct: 267 REKERERSRERSKEQRSRGEVEEKKHKEDKDDRRHRD 303
>AL160171-6|CAI12933.1| 546|Homo sapiens PRP38 pre-mRNA processing
factor 38 (yeast) domain containing B protein.
Length = 546
Score = 28.3 bits (60), Expect = 8.7
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +3
Query: 6 RIRSRDEIRPRD-EIRSRDEIKPKDELTSKDDNRSKD 113
R + R+ R R E RSR E++ K KDD R +D
Sbjct: 378 REKERERSRERSKEQRSRGEVEEKKHKEDKDDRRHRD 414
>AL158049-2|CAI21527.2| 503|Homo sapiens LEM domain containing 2
protein.
Length = 503
Score = 28.3 bits (60), Expect = 8.7
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +3
Query: 12 RSRDEIRPRDEIRSRDEIKPKDELTSKDDNRSKD 113
R R E R RDE R R+E +P+ E +++ R ++
Sbjct: 37 RLRGEARLRDEERLREEARPRGEERLREEARLRE 70
>AK074959-1|BAC11316.1| 503|Homo sapiens protein ( Homo sapiens
cDNA FLJ90478 fis, clone NT2RP3002790. ).
Length = 503
Score = 28.3 bits (60), Expect = 8.7
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +3
Query: 12 RSRDEIRPRDEIRSRDEIKPKDELTSKDDNRSKD 113
R R E R RDE R R+E +P+ E +++ R ++
Sbjct: 37 RLRGEARLRDEERLREEARPRGEERLREEARLRE 70
>AK001192-1|BAA91546.1| 546|Homo sapiens protein ( Homo sapiens
cDNA FLJ10330 fis, clone NT2RM2000624, weakly similar to
SPLICING FACTOR, ARGININE/SERINE-RICH 4. ).
Length = 546
Score = 28.3 bits (60), Expect = 8.7
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +3
Query: 6 RIRSRDEIRPRD-EIRSRDEIKPKDELTSKDDNRSKD 113
R + R+ R R E RSR E++ K KDD R +D
Sbjct: 378 REKERERSRERSKEQRSRGEVEEKKHKEDKDDRRHRD 414
>AF269088-1|AAK27326.1| 1011|Homo sapiens breast cancer antigen
NY-BR-1.1 protein.
Length = 1011
Score = 28.3 bits (60), Expect = 8.7
Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = +3
Query: 18 RDEIRPRDEIRSRDEIKPKDELTSK-DDNRSKDVVSNERRIS 140
+++IRP +++R + E+K + E T + D K V SN ++S
Sbjct: 877 KEKIRPEEQLRKKLEVKHQLEQTLRIQDIELKSVTSNLNQVS 918
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,385,279
Number of Sequences: 237096
Number of extensions: 578091
Number of successful extensions: 6159
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 5988
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6149
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2526356360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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