Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_B12
(380 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z75539-1|CAA99843.1| 672|Caenorhabditis elegans Hypothetical pr... 31 0.37
Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical pr... 30 0.49
AC024848-3|AAP31424.1| 83|Caenorhabditis elegans Hypothetical ... 30 0.49
AC024848-1|AAV34780.1| 258|Caenorhabditis elegans Hypothetical ... 30 0.49
AF043692-2|AAB97531.1| 253|Caenorhabditis elegans Hypothetical ... 29 0.85
Z93385-4|CAB07640.1| 806|Caenorhabditis elegans Hypothetical pr... 28 2.0
Z81492-4|CAB04031.1| 624|Caenorhabditis elegans Hypothetical pr... 28 2.0
Z68315-5|CAE48501.1| 689|Caenorhabditis elegans Hypothetical pr... 28 2.0
Z68315-4|CAA92675.2| 745|Caenorhabditis elegans Hypothetical pr... 28 2.0
Z49911-11|CAA90135.2| 452|Caenorhabditis elegans Hypothetical p... 28 2.0
Z36948-6|CAA85414.2| 452|Caenorhabditis elegans Hypothetical pr... 28 2.0
X96762-1|CAA65537.1| 806|Caenorhabditis elegans DNA topoisomera... 28 2.0
Z71186-8|CAA94917.2| 1322|Caenorhabditis elegans Hypothetical pr... 28 2.6
U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein (spl... 28 2.6
U88172-8|AAB42258.1| 312|Caenorhabditis elegans Hypothetical pr... 27 3.4
U97001-5|AAB52260.3| 1592|Caenorhabditis elegans Temporarily ass... 27 6.0
AL110482-3|CAB60336.1| 339|Caenorhabditis elegans Hypothetical ... 27 6.0
U56966-10|AAA98722.1| 686|Caenorhabditis elegans Amyloid precur... 26 7.9
U56966-9|AAK68242.1| 684|Caenorhabditis elegans Amyloid precurs... 26 7.9
U53149-5|AAA96121.2| 427|Caenorhabditis elegans Hypothetical pr... 26 7.9
U00240-1|AAC46470.1| 680|Caenorhabditis elegans beta-amyloid pr... 26 7.9
>Z75539-1|CAA99843.1| 672|Caenorhabditis elegans Hypothetical
protein F28C1.1 protein.
Length = 672
Score = 30.7 bits (66), Expect = 0.37
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = +3
Query: 6 RIRSRDEIRPRDEIRSRDEIKPKDELTSKDDNRSKDVVSNERRIS 140
R RSRD R R SR + KD + +RS+D + +RR S
Sbjct: 464 RSRSRDRRRHRSRSTSRRRQRSKDRRRDRSRDRSRDERNEKRRTS 508
>Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical
protein W02B12.3a protein.
Length = 312
Score = 30.3 bits (65), Expect = 0.49
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +3
Query: 6 RIRSRDEIRPRDEIRSRDEIKPKDELTSKDDNRSKDVVSNERRIS 140
R RSR R R RSRD + + +S+ +RS+ RR S
Sbjct: 205 RSRSRSNSRSRSRSRSRDRRRSRSRSSSRSKSRSRSPPKRSRRES 249
>AC024848-3|AAP31424.1| 83|Caenorhabditis elegans Hypothetical
protein Y67D8A.2b protein.
Length = 83
Score = 30.3 bits (65), Expect = 0.49
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Frame = -2
Query: 250 DLHFG-----IYHLWALNLLVSLVNHLWMIYHHHEVLYYL*DEILLSFETTSFDLLSSLE 86
DLH+G + L+ L L+ + +IY HHE+L I F F++ S+ +
Sbjct: 9 DLHYGHLQMDLVALYLLTLVQMISAGCKVIYTHHEILLVKIKTIFQFFNKNGFEIFSNKK 68
Query: 85 VNSSF 71
+SF
Sbjct: 69 RKNSF 73
>AC024848-1|AAV34780.1| 258|Caenorhabditis elegans Hypothetical
protein Y67D8A.2a protein.
Length = 258
Score = 30.3 bits (65), Expect = 0.49
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Frame = -2
Query: 250 DLHFG-----IYHLWALNLLVSLVNHLWMIYHHHEVLYYL*DEILLSFETTSFDLLSSLE 86
DLH+G + L+ L L+ + +IY HHE+L I F F++ S+ +
Sbjct: 167 DLHYGHLQMDLVALYLLTLVQMISAGCKVIYTHHEILLVKIKTIFQFFNKNGFEIFSNKK 226
Query: 85 VNSSF 71
+SF
Sbjct: 227 RKNSF 231
>AF043692-2|AAB97531.1| 253|Caenorhabditis elegans Hypothetical
protein C17F3.3 protein.
Length = 253
Score = 29.5 bits (63), Expect = 0.85
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +3
Query: 12 RSRDEIRPRDEIRSRDEIKPKDELTSKDDNRSKD 113
+ DE + + +S+DE K KDE+ K ++ KD
Sbjct: 123 KKEDEKKEESKEKSKDEEKKKDEVKDKKEDEKKD 156
Score = 28.7 bits (61), Expect = 1.5
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = +3
Query: 12 RSRDEIRPRDEIRSRDEIKPKDELTSKDDNRSKDVVSNERR 134
+S+DE + +DE++ + E + KD+ + K+ V E +
Sbjct: 135 KSKDEEKKKDEVKDKKEDEKKDDKKPGEKEEKKEEVKKETK 175
>Z93385-4|CAB07640.1| 806|Caenorhabditis elegans Hypothetical
protein M01E5.5a protein.
Length = 806
Score = 28.3 bits (60), Expect = 2.0
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +3
Query: 15 SRDEIRPRDEIRSRDEIKPKDELTSKDDNRSKDVVSNERR 134
S ++++P +I S DE++ +DE + DD + ERR
Sbjct: 126 SEEDVKP--QIHSDDELEEEDEAPTTDDEEEQKRKEKERR 163
>Z81492-4|CAB04031.1| 624|Caenorhabditis elegans Hypothetical
protein E03H4.7 protein.
Length = 624
Score = 28.3 bits (60), Expect = 2.0
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = -2
Query: 316 SFLVSEKASHFCFCKAYLLYIYDLHFGIYHLWALN 212
+FLVS K + +Y LY+ LH+ IY W LN
Sbjct: 285 NFLVSNKLISYIGDISYALYL--LHWPIYSYWKLN 317
>Z68315-5|CAE48501.1| 689|Caenorhabditis elegans Hypothetical
protein F28C6.4b protein.
Length = 689
Score = 28.3 bits (60), Expect = 2.0
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 6/77 (7%)
Frame = -2
Query: 277 CKAYLLYIYDLHFGIY--HLWALNLLVSLVNHLW----MIYHHHEVLYYL*DEILLSFET 116
C LL L G++ HL + + L+N + +I HE+ YYL ++
Sbjct: 403 CVFLLLVALTLSMGLWNLHLSKSDFFIFLINITYFASSLIEEEHEIWYYLGSTVVAIRAL 462
Query: 115 TSFDLLSSLEVNSSFGL 65
+F + + EV S F L
Sbjct: 463 RNFKIWNKTEVKSIFFL 479
>Z68315-4|CAA92675.2| 745|Caenorhabditis elegans Hypothetical
protein F28C6.4a protein.
Length = 745
Score = 28.3 bits (60), Expect = 2.0
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 6/77 (7%)
Frame = -2
Query: 277 CKAYLLYIYDLHFGIY--HLWALNLLVSLVNHLW----MIYHHHEVLYYL*DEILLSFET 116
C LL L G++ HL + + L+N + +I HE+ YYL ++
Sbjct: 403 CVFLLLVALTLSMGLWNLHLSKSDFFIFLINITYFASSLIEEEHEIWYYLGSTVVAIRAL 462
Query: 115 TSFDLLSSLEVNSSFGL 65
+F + + EV S F L
Sbjct: 463 RNFKIWNKTEVKSIFFL 479
>Z49911-11|CAA90135.2| 452|Caenorhabditis elegans Hypothetical
protein D2089.1a protein.
Length = 452
Score = 28.3 bits (60), Expect = 2.0
Identities = 17/49 (34%), Positives = 23/49 (46%)
Frame = +3
Query: 3 TRIRSRDEIRPRDEIRSRDEIKPKDELTSKDDNRSKDVVSNERRISS*R 149
+R R RD R R RSRD + +KD +R + + RR S R
Sbjct: 311 SRSRDRDRDRDRKRSRSRDRKRRSRSRDNKDRDRKRSRSRDRRRRSKSR 359
>Z36948-6|CAA85414.2| 452|Caenorhabditis elegans Hypothetical
protein D2089.1a protein.
Length = 452
Score = 28.3 bits (60), Expect = 2.0
Identities = 17/49 (34%), Positives = 23/49 (46%)
Frame = +3
Query: 3 TRIRSRDEIRPRDEIRSRDEIKPKDELTSKDDNRSKDVVSNERRISS*R 149
+R R RD R R RSRD + +KD +R + + RR S R
Sbjct: 311 SRSRDRDRDRDRKRSRSRDRKRRSRSRDNKDRDRKRSRSRDRRRRSKSR 359
>X96762-1|CAA65537.1| 806|Caenorhabditis elegans DNA topoisomerase
protein.
Length = 806
Score = 28.3 bits (60), Expect = 2.0
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +3
Query: 15 SRDEIRPRDEIRSRDEIKPKDELTSKDDNRSKDVVSNERR 134
S ++++P +I S DE++ +DE + DD + ERR
Sbjct: 126 SEEDVKP--QIHSDDELEEEDEAPTTDDEEEQKRKEKERR 163
>Z71186-8|CAA94917.2| 1322|Caenorhabditis elegans Hypothetical
protein F23D12.2 protein.
Length = 1322
Score = 27.9 bits (59), Expect = 2.6
Identities = 11/30 (36%), Positives = 21/30 (70%)
Frame = -2
Query: 103 LLSSLEVNSSFGLISSLDLISSRGLISSRD 14
++S +E ++FGL S ++ S RG+I ++D
Sbjct: 542 IVSIIEKTAAFGLPSGIEFASERGVICTQD 571
>U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform a protein.
Length = 179
Score = 27.9 bits (59), Expect = 2.6
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +3
Query: 3 TRIRSRDEIRPRDEIRSRDEIKPKDELTSKDDNRSKDVVSNERR 134
+R RSRD R R RSRD + + S++ +R ++ + R
Sbjct: 108 SRSRSRDRGRDRSRDRSRDRSRDRSRDRSRERSRERERTRSRSR 151
Score = 27.5 bits (58), Expect = 3.4
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = +3
Query: 6 RIRSRDEIRPRDEIRSRDEIKPKDELTSKDDNRSKDVVSNERRISS*R 149
R RSRD R R RSRD + + + +RS+ +R S R
Sbjct: 117 RDRSRDRSRDRSRDRSRDRSRERSRERERTRSRSRSPQERDRSHSKSR 164
>U88172-8|AAB42258.1| 312|Caenorhabditis elegans Hypothetical
protein ZK354.3 protein.
Length = 312
Score = 27.5 bits (58), Expect = 3.4
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +3
Query: 12 RSRDEIRPRDEIRSRDEIKPKDELTSKDDNRSKD 113
R D+ + ++ +S+DE K KDE+ K ++ D
Sbjct: 129 RKEDDKKEENKEKSKDEEKKKDEVKDKKEDEKMD 162
>U97001-5|AAB52260.3| 1592|Caenorhabditis elegans Temporarily
assigned gene nameprotein 59 protein.
Length = 1592
Score = 26.6 bits (56), Expect = 6.0
Identities = 9/36 (25%), Positives = 22/36 (61%)
Frame = +3
Query: 30 RPRDEIRSRDEIKPKDELTSKDDNRSKDVVSNERRI 137
R DE ++ + KPKDE+ ++ + + K++ +++
Sbjct: 508 RLEDEALAQQQQKPKDEIVAESEKKLKELKERNKQL 543
>AL110482-3|CAB60336.1| 339|Caenorhabditis elegans Hypothetical
protein Y39G8B.2 protein.
Length = 339
Score = 26.6 bits (56), Expect = 6.0
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -2
Query: 199 LVNHLWMIYHHHEVLYYL*DEILLSFETTSFDLL 98
L + +W YH DE+L FETT DL+
Sbjct: 77 LSSKIWNTYHSRNRCMQQIDEMLEIFETTYMDLI 110
>U56966-10|AAA98722.1| 686|Caenorhabditis elegans Amyloid
precursor-like protein1, isoform a protein.
Length = 686
Score = 26.2 bits (55), Expect = 7.9
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +2
Query: 116 SFEREKNLVLEIV*DLVMMIDHPEMIYQRNQEIQGPEM 229
S E E + E+ D+ +ID P Y+ ++ IQ PE+
Sbjct: 575 SDEDEDKNIKELRVDIEPIIDEPASFYRHDKLIQSPEV 612
>U56966-9|AAK68242.1| 684|Caenorhabditis elegans Amyloid
precursor-like protein1, isoform b protein.
Length = 684
Score = 26.2 bits (55), Expect = 7.9
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +2
Query: 116 SFEREKNLVLEIV*DLVMMIDHPEMIYQRNQEIQGPEM 229
S E E + E+ D+ +ID P Y+ ++ IQ PE+
Sbjct: 573 SDEDEDKNIKELRVDIEPIIDEPASFYRHDKLIQSPEV 610
>U53149-5|AAA96121.2| 427|Caenorhabditis elegans Hypothetical
protein C24B5.1 protein.
Length = 427
Score = 26.2 bits (55), Expect = 7.9
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -2
Query: 256 IYDLHFGIYHLWALNLLVSLVNHLWMIYHHHEVLYYL 146
I + FGI +L +SL H++ +Y HH L+YL
Sbjct: 357 IASILFGISEQSSLMTAISLGAHVF-LYTHHAFLFYL 392
>U00240-1|AAC46470.1| 680|Caenorhabditis elegans beta-amyloid
protein precursor protein.
Length = 680
Score = 26.2 bits (55), Expect = 7.9
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +2
Query: 116 SFEREKNLVLEIV*DLVMMIDHPEMIYQRNQEIQGPEM 229
S E E + E+ D+ +ID P Y+ ++ IQ PE+
Sbjct: 569 SDEDEDKNIKELRVDIEPIIDEPASFYRHDKLIQSPEV 606
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,110,068
Number of Sequences: 27780
Number of extensions: 101766
Number of successful extensions: 520
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 511
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 567749674
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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