Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_B11
         (622 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein S3a|S...   167   1e-42
SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein S3a|...   163   2e-41
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ...    29   0.54 
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ...    28   0.95 
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce...    27   2.9  
SPAC664.08c |||traub transciption factor family protein |Schizos...    25   6.7  

>SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein
           S3a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 252

 Score =  167 bits (406), Expect = 1e-42
 Identities = 76/125 (60%), Positives = 98/125 (78%)
 Frame = +3

Query: 72  IVDPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDA 251
           +VDPF+RKDWYD+KAP+ F  + VG TLVNRT G K A++ LKGR+ EVSLADLQ D   
Sbjct: 20  VVDPFSRKDWYDIKAPAFFEVKNVGKTLVNRTAGLKNANDSLKGRILEVSLADLQKDE-- 77

Query: 252 ERSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRV 431
           E SFRK +L  ED+QG++ L +F+G D+T+DKLR +V+KWQ+ IEAN  +KTTDGY+ R+
Sbjct: 78  EHSFRKVKLRVEDIQGKSCLTSFNGFDMTSDKLRSLVRKWQSTIEANQTIKTTDGYLCRI 137

Query: 432 FCIGF 446
           F IGF
Sbjct: 138 FVIGF 142



 Score = 57.6 bits (133), Expect = 1e-09
 Identities = 26/60 (43%), Positives = 39/60 (65%)
 Frame = +1

Query: 442 GFTNKDTLSQRKTCYAQHTQVRAIRKKMCEIITRDVTSSELREVVNKLIPDSIAKDIEKA 621
           GFT++     +KT YAQ +Q+RAI +KM ++I        ++E+V KLIP+ I + IEKA
Sbjct: 141 GFTSRRVNQVKKTTYAQSSQIRAIHQKMFQVIQNQANGCSMKELVQKLIPEVIGRAIEKA 200


>SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein
           S3a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 252

 Score =  163 bits (395), Expect = 2e-41
 Identities = 74/125 (59%), Positives = 98/125 (78%)
 Frame = +3

Query: 72  IVDPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDA 251
           +VDPF+RK+WYD+KAP+ F  + VG TLVNRT G K A++ LKGR+ EVSLADLQ D   
Sbjct: 20  VVDPFSRKEWYDIKAPAFFEVKNVGKTLVNRTAGLKNANDSLKGRILEVSLADLQKDE-- 77

Query: 252 ERSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRV 431
           E +FRK +L  ED+QG++ L +F+G+ +T+DKLR +V+KWQT IEA+  +KTTDGY+ RV
Sbjct: 78  EHAFRKVKLRVEDIQGKSCLTSFNGLSITSDKLRSLVRKWQTTIEADQTIKTTDGYLCRV 137

Query: 432 FCIGF 446
           F IGF
Sbjct: 138 FVIGF 142



 Score = 62.9 bits (146), Expect = 4e-11
 Identities = 28/60 (46%), Positives = 42/60 (70%)
 Frame = +1

Query: 442 GFTNKDTLSQRKTCYAQHTQVRAIRKKMCEIITRDVTSSELREVVNKLIPDSIAKDIEKA 621
           GFT +     +KT YAQ +Q+RAIR+KM ++I    +S  +RE+V KLIP+ I ++IE+A
Sbjct: 141 GFTRRRANQVKKTTYAQSSQIRAIRQKMFQVIQNQTSSCSMRELVQKLIPEVIGREIERA 200


>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 308

 Score = 29.1 bits (62), Expect = 0.54
 Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
 Frame = +3

Query: 207 VFEVSLADLQADSDAERSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMV--KKWQTL 380
           VF+V   + + D    R+  +   +A   Q R V C  H MDL  + LR +V  ++   L
Sbjct: 86  VFDVESREFERDLVTFRNCLE-ATVANSPQAR-VFCLIHKMDLVQEDLRDLVFEERKAIL 143

Query: 381 IEANIDVKTT 410
           +E + D++TT
Sbjct: 144 LETSKDLETT 153


>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 490

 Score = 28.3 bits (60), Expect = 0.95
 Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
 Frame = +3

Query: 384 EANIDVKTTDGYVL---RVFCIGFHQQGYAQPTQDMLRSAYPSPRNQEKNV 527
           E   +  + DG +L   R+FC+ F    YA+P  ++L+     P  +  +V
Sbjct: 344 EITFETTSKDGNLLNAIRIFCLYFDLDYYARPNGEVLKLVVTHPNKKNTSV 394


>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 960

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +3

Query: 417 YVLRVFCIGFHQQGYAQPTQDMLRSAYPSPRNQE 518
           Y+L++  I  H+ G  Q TQ ++ S  PSP  +E
Sbjct: 678 YLLQLGHIDLHKIGAFQATQILIVSKQPSPEAEE 711


>SPAC664.08c |||traub transciption factor family protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 452

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +3

Query: 330 DLTTD-KLRWMVKKWQTLIEANIDVKTTDGYVLR 428
           D T D  +RWM  K Q   + N+D K + G  +R
Sbjct: 351 DSTRDGTVRWMATKKQKQKKENVDTKASKGRKIR 384


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,550,981
Number of Sequences: 5004
Number of extensions: 52025
Number of successful extensions: 135
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)