Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_B11
(622 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0043 + 5242496-5242554,5242673-5242778,5243586-5243723,524... 198 4e-51
12_02_0012 - 12309332-12310228,12311087-12311669,12311945-123120... 196 2e-50
02_02_0482 - 10819562-10819813,10820773-10820952,10822073-108221... 196 2e-50
12_01_0014 + 105422-105520,105598-105725,105939-106101,106198-10... 29 3.0
11_01_0014 + 108647-108816,109704-109803,109891-110018,110232-11... 29 3.0
11_01_0807 - 7178278-7178548,7178629-7178756,7178847-7179815,718... 29 3.9
11_01_0485 + 3728686-3728863,3729933-3730095,3730508-3730549,373... 27 9.1
10_06_0143 - 11183574-11183761,11183989-11184344,11184437-111845... 27 9.1
09_04_0708 + 19648511-19648808,19649189-19649280,19650850-196510... 27 9.1
>03_02_0043 +
5242496-5242554,5242673-5242778,5243586-5243723,
5243794-5243979,5244075-5244275,5244362-5244460
Length = 262
Score = 198 bits (482), Expect = 4e-51
Identities = 93/124 (75%), Positives = 107/124 (86%)
Frame = +3
Query: 75 VDPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDAE 254
VDPF +KDWYD+KAPS+F R +G TLV+RTQGTKIASEGLK RVFEVSLADLQ D D
Sbjct: 21 VDPFAKKDWYDIKAPSVFNVRNIGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED-- 78
Query: 255 RSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVF 434
+++RK RL AEDVQG+NVL NF GM TTDKLR +VKKWQTLIEA++DVKTTDGY+LR+F
Sbjct: 79 QAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDGYMLRLF 138
Query: 435 CIGF 446
CIGF
Sbjct: 139 CIGF 142
Score = 66.1 bits (154), Expect = 2e-11
Identities = 29/60 (48%), Positives = 43/60 (71%)
Frame = +1
Query: 442 GFTNKDTLSQRKTCYAQHTQVRAIRKKMCEIITRDVTSSELREVVNKLIPDSIAKDIEKA 621
GFT + ++TCYAQ +Q+R IR+KM EI+ +S +L+E+V+K IP+ I K+IEKA
Sbjct: 141 GFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMANQASSCDLKELVSKFIPEVIGKEIEKA 200
>12_02_0012 -
12309332-12310228,12311087-12311669,12311945-12312051,
12313190-12313237,12315139-12315216,12315300-12315500,
12315612-12315797,12315870-12316007,12318311-12318416,
12318529-12318587
Length = 800
Score = 196 bits (477), Expect = 2e-50
Identities = 93/124 (75%), Positives = 106/124 (85%)
Frame = +3
Query: 75 VDPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDAE 254
VDPF +KDWYD+KAPS+F R VG TLV+RTQGTKIASEGLK RVFEVSLADLQ D D
Sbjct: 21 VDPFAKKDWYDIKAPSVFNVRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED-- 78
Query: 255 RSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVF 434
+++RK RL AEDVQG+NVL NF GM TTDKLR +VKKWQTLIEA++DVKTTD Y+LR+F
Sbjct: 79 QAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLRLF 138
Query: 435 CIGF 446
CIGF
Sbjct: 139 CIGF 142
Score = 66.1 bits (154), Expect = 2e-11
Identities = 29/60 (48%), Positives = 43/60 (71%)
Frame = +1
Query: 442 GFTNKDTLSQRKTCYAQHTQVRAIRKKMCEIITRDVTSSELREVVNKLIPDSIAKDIEKA 621
GFT + ++TCYAQ +Q+R IR+KM EI+ +S +L+E+V+K IP+ I K+IEKA
Sbjct: 141 GFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMVNQASSCDLKELVSKFIPEVIGKEIEKA 200
>02_02_0482 -
10819562-10819813,10820773-10820952,10822073-10822150,
10823056-10823256,10823365-10823550,10823646-10823783,
10824396-10824501,10824634-10824692
Length = 399
Score = 196 bits (477), Expect = 2e-50
Identities = 92/124 (74%), Positives = 108/124 (87%)
Frame = +3
Query: 75 VDPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDAE 254
VDPF++KDWYD+KAP++F+ R +G TLV+RTQGTKIASEGLK RVFEVSLADLQ D D
Sbjct: 21 VDPFSKKDWYDIKAPTVFSVRNIGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED-- 78
Query: 255 RSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVF 434
+++RK RL AEDVQGRNVL NF GM TTDKLR +VKKWQTLIEA++DVKTTD Y+LR+F
Sbjct: 79 QAYRKVRLRAEDVQGRNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLRLF 138
Query: 435 CIGF 446
CIGF
Sbjct: 139 CIGF 142
Score = 63.7 bits (148), Expect = 1e-10
Identities = 27/60 (45%), Positives = 43/60 (71%)
Frame = +1
Query: 442 GFTNKDTLSQRKTCYAQHTQVRAIRKKMCEIITRDVTSSELREVVNKLIPDSIAKDIEKA 621
GFT + ++TCYAQ +Q+R IR+KM EI+ ++ +L+E+V+K IP+ I K+IEK+
Sbjct: 141 GFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMANQASTCDLKELVSKFIPEVIGKEIEKS 200
>12_01_0014 +
105422-105520,105598-105725,105939-106101,106198-106310,
106787-106825,107026-107109,107193-107241,107331-107422,
107680-107809,107906-107982,108058-109676,110024-110221,
110287-110825
Length = 1109
Score = 29.1 bits (62), Expect = 3.0
Identities = 21/75 (28%), Positives = 30/75 (40%), Gaps = 1/75 (1%)
Frame = +1
Query: 280 SLRMSRDVMFSAISTAWTSPLINSDGW*RNGRHXXXXXXXXXXXXDMSYVFSASG-FTNK 456
SL S D+ FS I +AW + SDG + +S + SG T+K
Sbjct: 409 SLESSLDIDFSTIPSAWNDDDVTSDGMSKGSDEKQVVNDNGKFECSVSSKPAESGHLTSK 468
Query: 457 DTLSQRKTCYAQHTQ 501
T S +K T+
Sbjct: 469 STTSPKKDIAVNSTR 483
>11_01_0014 +
108647-108816,109704-109803,109891-110018,110232-110394,
110491-110603,111080-111118,111319-111402,111486-111534,
111624-111715,111999-112128,112225-112301,112377-113995,
114348-114545,114635-115173
Length = 1166
Score = 29.1 bits (62), Expect = 3.0
Identities = 21/75 (28%), Positives = 30/75 (40%), Gaps = 1/75 (1%)
Frame = +1
Query: 280 SLRMSRDVMFSAISTAWTSPLINSDGW*RNGRHXXXXXXXXXXXXDMSYVFSASG-FTNK 456
SL S D+ FS I +AW + SDG + +S + SG T+K
Sbjct: 466 SLESSLDIDFSTIPSAWNDDDVTSDGMSKGSDEKQVVNDNGKFECSVSSKPAESGHLTSK 525
Query: 457 DTLSQRKTCYAQHTQ 501
T S +K T+
Sbjct: 526 STTSPKKDIAVNSTR 540
>11_01_0807 -
7178278-7178548,7178629-7178756,7178847-7179815,
7180465-7180518,7180622-7180798,7180913-7181926,
7182038-7182101,7182247-7182563,7182797-7182847
Length = 1014
Score = 28.7 bits (61), Expect = 3.9
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 100 GTMLKRRPCSPRDKWAPPLSIAP 168
G + R PC PRDK+ P S+ P
Sbjct: 206 GAYIVRLPCGPRDKYLPKESLWP 228
>11_01_0485 +
3728686-3728863,3729933-3730095,3730508-3730549,
3730833-3730927,3731273-3731334,3731416-3731507,
3731587-3731722,3731818-3731904,3732430-3732519,
3732969-3733071,3733616-3733716,3733837-3733971,
3734006-3734093,3734484-3734544,3734626-3734689,
3735219-3735347
Length = 541
Score = 27.5 bits (58), Expect = 9.1
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 9/54 (16%)
Frame = -3
Query: 563 SSELVTSRVMISHIFFLIARTWVC*A*H------VLRWLSVSL---LVKPDAEN 429
+ EL SR+ ++H+ + +RT+VC + +L W VS+ L+ PDA N
Sbjct: 454 NKELDRSRLQLNHVDAITSRTYVCNQCYSKFIDFLLYWFRVSMPRNLLPPDAAN 507
>10_06_0143 -
11183574-11183761,11183989-11184344,11184437-11184592,
11184825-11184994,11185906-11186064,11186856-11187164,
11187281-11187576,11187825-11188174,11188279-11188434,
11188634-11188803,11189289-11189447,11190702-11191010,
11191172-11191458,11191911-11192263,11192366-11192521,
11192680-11192849,11195800-11195958,11196937-11197254,
11197658-11197786
Length = 1449
Score = 27.5 bits (58), Expect = 9.1
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +3
Query: 285 EDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEAN 392
E +QG LCN +GM T+ LR + W T I N
Sbjct: 180 EKLQGEYQLCNGYGMKKATEVLR---EHWSTYILEN 212
>09_04_0708 +
19648511-19648808,19649189-19649280,19650850-19651000,
19651779-19651906,19652099-19652257,19652325-19652507,
19652978-19653178,19653269-19653289
Length = 410
Score = 27.5 bits (58), Expect = 9.1
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Frame = +3
Query: 207 VFEVSLADLQADS----DAERSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQ 374
+ ++++ADL S D +R+ ++ ++ E + N L DKL +V Q
Sbjct: 144 LMKIAIADLNNSSISLEDRQRALQELLILVEPIDNANDL----------DKLGGLVAVIQ 193
Query: 375 TLIEANIDVKTTDGYVL 425
L AN +++TT +VL
Sbjct: 194 DLNNANEEIRTTSAWVL 210
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,268,201
Number of Sequences: 37544
Number of extensions: 372645
Number of successful extensions: 932
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 929
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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