Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_B11
(622 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z32681-6|CAA83605.1| 257|Caenorhabditis elegans Hypothetical pr... 191 4e-49
AL161712-11|CAC70135.1| 2870|Caenorhabditis elegans Hypothetical... 30 1.2
U50191-6|AAK31554.2| 235|Caenorhabditis elegans Hypothetical pr... 29 3.5
AF016415-8|AAW88415.1| 297|Caenorhabditis elegans Serpentine re... 29 3.5
Z29115-6|CAA82365.2| 1374|Caenorhabditis elegans Hypothetical pr... 27 8.2
Z29115-5|CAA82366.2| 1368|Caenorhabditis elegans Hypothetical pr... 27 8.2
Z19153-7|CAA79550.2| 1374|Caenorhabditis elegans Hypothetical pr... 27 8.2
Z19153-6|CAA79551.2| 1368|Caenorhabditis elegans Hypothetical pr... 27 8.2
AC024756-2|AAK29884.1| 413|Caenorhabditis elegans Hypothetical ... 27 8.2
>Z32681-6|CAA83605.1| 257|Caenorhabditis elegans Hypothetical
protein F56F3.5 protein.
Length = 257
Score = 191 bits (465), Expect = 4e-49
Identities = 92/131 (70%), Positives = 106/131 (80%)
Frame = +3
Query: 75 VDPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDAE 254
VDPF+RK+WYD+KAP+MF RQVG TL+NRTQGTKIASEGLKGRVFEVSL DL +++E
Sbjct: 20 VDPFSRKEWYDIKAPNMFNTRQVGKTLINRTQGTKIASEGLKGRVFEVSLGDL---NNSE 76
Query: 255 RSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVF 434
FRKF+LIAEDVQG+NVL NFH M +T DKL +VKKW TLIEAN VKTTDGY LRVF
Sbjct: 77 ADFRKFKLIAEDVQGKNVLTNFHAMSMTHDKLCSIVKKWHTLIEANTAVKTTDGYTLRVF 136
Query: 435 CIGFHQQGYAQ 467
I F ++ Q
Sbjct: 137 VIAFTKKSVNQ 147
Score = 62.1 bits (144), Expect = 3e-10
Identities = 29/58 (50%), Positives = 40/58 (68%)
Frame = +1
Query: 445 FTNKDTLSQRKTCYAQHTQVRAIRKKMCEIITRDVTSSELREVVNKLIPDSIAKDIEK 618
FT K +KT Y + +++R IR +M I ++VT +L+EVV+KLIPDSI KDIEK
Sbjct: 140 FTKKSVNQVKKTSYTKTSKIRKIRSEMIGCIEKEVTGCDLKEVVSKLIPDSIGKDIEK 197
>AL161712-11|CAC70135.1| 2870|Caenorhabditis elegans Hypothetical
protein Y66D12A.14 protein.
Length = 2870
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/35 (42%), Positives = 16/35 (45%)
Frame = -1
Query: 217 TSKTRPFRPSDAIFVPWVRLTRVVPTCLLVNMDGA 113
TSK +P R D I V R T CL V GA
Sbjct: 2175 TSKAQPIRSDDVISVAGTRSTETTMKCLAVQFTGA 2209
>U50191-6|AAK31554.2| 235|Caenorhabditis elegans Hypothetical
protein T14B4.8 protein.
Length = 235
Score = 28.7 bits (61), Expect = 3.5
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = -1
Query: 184 AIFVPWVRLTRVVPTCLLVNMDGALTSYQSLRVKG 80
+ F+P++R R VPT +++ +G + Y +L G
Sbjct: 119 SFFIPFLRPRRTVPTFSIIDWNGEVLGYYALASDG 153
>AF016415-8|AAW88415.1| 297|Caenorhabditis elegans Serpentine
receptor, class bc (class b-like) protein 32 protein.
Length = 297
Score = 28.7 bits (61), Expect = 3.5
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = -1
Query: 409 VVLTSMLASISVCHFFTIHLSLSVVRSMPWKLQRTLRPWTSSAISL 272
V + ++ ++ V H F+ H L V +PW T R + AISL
Sbjct: 60 VYIIFVILTMEVPHLFSNHRGLIVTLGLPWSNFATCRSAIALAISL 105
>Z29115-6|CAA82365.2| 1374|Caenorhabditis elegans Hypothetical
protein C38C10.5b protein.
Length = 1374
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 115 RRPCSPRDKWAPPLSIAPREQKL 183
R P ++ + PP I PREQKL
Sbjct: 86 RMPSKIKEAFIPPAKITPREQKL 108
>Z29115-5|CAA82366.2| 1368|Caenorhabditis elegans Hypothetical
protein C38C10.5a protein.
Length = 1368
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 115 RRPCSPRDKWAPPLSIAPREQKL 183
R P ++ + PP I PREQKL
Sbjct: 86 RMPSKIKEAFIPPAKITPREQKL 108
>Z19153-7|CAA79550.2| 1374|Caenorhabditis elegans Hypothetical
protein C38C10.5b protein.
Length = 1374
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 115 RRPCSPRDKWAPPLSIAPREQKL 183
R P ++ + PP I PREQKL
Sbjct: 86 RMPSKIKEAFIPPAKITPREQKL 108
>Z19153-6|CAA79551.2| 1368|Caenorhabditis elegans Hypothetical
protein C38C10.5a protein.
Length = 1368
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 115 RRPCSPRDKWAPPLSIAPREQKL 183
R P ++ + PP I PREQKL
Sbjct: 86 RMPSKIKEAFIPPAKITPREQKL 108
>AC024756-2|AAK29884.1| 413|Caenorhabditis elegans Hypothetical
protein Y34D9A.1 protein.
Length = 413
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = -3
Query: 335 EVHAVEIAENITSLDILSDKSELAE 261
E+H +E AE++ SL +L KSE+ +
Sbjct: 63 EMHIIEPAEHMKSLKVLMQKSEIEQ 87
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,300,166
Number of Sequences: 27780
Number of extensions: 312981
Number of successful extensions: 823
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 822
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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