Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_B07
(613 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 274 9e-75
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 146 2e-36
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 144 9e-36
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 141 6e-35
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 36 0.003
SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase |Schiz... 29 0.53
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 27 1.6
SPBC19G7.16 |iws1||transcription elongation factor complex subun... 27 2.1
SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c... 27 2.1
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos... 27 2.8
SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|... 26 3.7
SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual 26 3.7
SPAC1805.16c |||purine nucleoside phosphorylase |Schizosaccharom... 26 3.7
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c... 26 4.9
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 26 4.9
SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1 |Schiz... 26 4.9
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 25 8.6
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 274 bits (671), Expect = 9e-75
Identities = 121/177 (68%), Positives = 140/177 (79%)
Frame = +1
Query: 82 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 261
MREIVHIQAGQCGNQ+GA FW I+DEHG+D G YHG S+ Q ER+NVY+NEA+GGKYV
Sbjct: 1 MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHERLNVYFNEAAGGKYV 60
Query: 262 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 441
PRA+LVDLEPGTMD+V+SG FG +FRPDN ++GQSGAGN WAKGHYTEGAEL D+VLDVV
Sbjct: 61 PRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAVLDVV 120
Query: 442 RKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSPKVSD 612
R+EAE+CD LQGFQ KIREEYPDR+M T+SV P+PK SD
Sbjct: 121 RREAEACDALQGFQLTHSLGGGTGSGMGTLLLSKIREEYPDRMMATFSVAPAPKSSD 177
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 146 bits (355), Expect = 2e-36
Identities = 71/178 (39%), Positives = 100/178 (56%), Gaps = 2/178 (1%)
Frame = +1
Query: 82 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLER--INVYYNEASGGK 255
MREI+ I GQ G QIG WE+ EHGI P G + ++ Q + +++E GK
Sbjct: 1 MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60
Query: 256 YVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD 435
YVPR+I VDLEP +D VR+GP+ +F P+ + G+ A NN+A+GHYT G ELVD V D
Sbjct: 61 YVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKELVDEVTD 120
Query: 436 VVRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSPKVS 609
+R+ A++C LQGF ++ EY + +SV P+P+VS
Sbjct: 121 KIRRIADNCSGLQGFLVFHSFGGGTGSGFGALLLERLAMEYTKKSKLQFSVYPAPQVS 178
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 144 bits (349), Expect = 9e-36
Identities = 65/179 (36%), Positives = 108/179 (60%), Gaps = 3/179 (1%)
Frame = +1
Query: 85 REIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYVP 264
REI+ +QAGQCGNQIG++FW+ + EHGI P G + ++R +V++ ++ +Y+P
Sbjct: 3 REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFATEGVDRKDVFFYQSDDTRYIP 62
Query: 265 RAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQS--GAGNNWAKGHYTEGAELVDSVLDV 438
RAIL+DLEP ++++ S +G ++ P+N + ++ GAGNNWA G Y+ + + ++D+
Sbjct: 63 RAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG-YSHAERIFEDIMDM 121
Query: 439 VRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVP-SPKVSD 612
+ +EA+ D L+GF ++ + YP +I+ TYSV P S VSD
Sbjct: 122 IDREADGSDSLEGFSLLHSIAGGTGSGLGSFLLERLNDRYPKKIIQTYSVFPNSQSVSD 180
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 141 bits (342), Expect = 6e-35
Identities = 68/182 (37%), Positives = 101/182 (55%), Gaps = 6/182 (3%)
Frame = +1
Query: 82 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTG------AYHGDSDLQLERINVYYNEA 243
MRE++ + GQ G QIG WE+ EHGI P G H ++ + +++E
Sbjct: 1 MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGFPTENSEVHKNNSYLNDGFGTFFSET 60
Query: 244 SGGKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVD 423
GK+VPR+I VDLEP +D VR+GP+ +F P+ V G+ A NN+A+GHYT G E++D
Sbjct: 61 GQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEMID 120
Query: 424 SVLDVVRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSPK 603
SVL+ +R+ A++C LQGF ++ EY + +SV P+P+
Sbjct: 121 SVLERIRRMADNCSGLQGFLVFHSFGGGTGSGLGALLLERLNMEYGKKSNLQFSVYPAPQ 180
Query: 604 VS 609
VS
Sbjct: 181 VS 182
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 36.3 bits (80), Expect = 0.003
Identities = 36/184 (19%), Positives = 71/184 (38%)
Frame = +2
Query: 53 SNLFSSDISK*GKSCTSRPDNAETRLELSSGRSSPMSTASTPPVLTTATQTCSWSASMFI 232
S+ SS I S +S P + + + SS SS T+++ + ++++ + S+S+++
Sbjct: 265 SSSSSSSIISSSSSSSSSPTSTSSTIS-SSSSSSSSPTSTSSTISSSSSSSSSFSSTLSS 323
Query: 233 TMRXXXXXXXXXXXXXXXXXXXXXXXXRDPSDRSSAPTTSFSDSPAPVTTGLRDTTRKVL 412
+ S S+ ++ S S + + T+ L
Sbjct: 324 SSMSSSSSFSSSPTSSSSTISSSSSSPSSSSFSSTTSSSKSSSSFSSTVSSSSSTSSSTL 383
Query: 413 S*SIPS*T*FARKQSHVIVYKDSNSHTPSEAVLAPVWAPFSSLKYEKNTPTES*THTLLY 592
+ S S + A SH S + S++ APV + F + + S +H+L
Sbjct: 384 TSSSSSSSRPASSSSHSSSLSSHKSSSSSKSSSAPVSSAFYHNSTSSRSSSHSSSHSLSS 443
Query: 593 LHLK 604
L K
Sbjct: 444 LSSK 447
Score = 27.9 bits (59), Expect = 1.2
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = +2
Query: 92 SCTSRPDNAETRLELSSGRSSPMSTASTPPVLTTATQTCSWSASMFITM 238
S +SR + + LSS S P+ TAS+ +LT+++ T S +T+
Sbjct: 427 STSSRSSSHSSSHSLSSLSSKPILTASSSSLLTSSSHTYERSTVYVVTV 475
>SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 603
Score = 29.1 bits (62), Expect = 0.53
Identities = 14/51 (27%), Positives = 27/51 (52%)
Frame = -2
Query: 168 AVLIGDDLPELSSNLVSALSGLDVHDFPHFDISELNKLLNTNIFCSARTTH 16
+++I D+L S + LSG ++ + H D+++L ++L I TH
Sbjct: 273 SLIISDELNHTSIRFGARLSGANIRVYKHNDMTDLERVLREVISQGQPRTH 323
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 27.5 bits (58), Expect = 1.6
Identities = 32/125 (25%), Positives = 47/125 (37%), Gaps = 3/125 (2%)
Frame = +2
Query: 50 LSNLFSSDISK*GKSCTSRPDNAETRLELSSG-RSSPMSTASTPPVLTTATQTCSWSASM 226
LS SS S + TS P + + + SS SSP T ST ++ +++ S S+S+
Sbjct: 592 LSISSSSTSSTFSSASTSSPSSISSSISSSSTILSSP--TPSTSSLMISSSSIISGSSSI 649
Query: 227 FITMRXXXXXXXXXXXXXXXXXXXXXXXXRDPSDR--SSAPTTSFSDSPAPVTTGLRDTT 400
+ S SS+P S S SP P ++ L T
Sbjct: 650 LSSSISTIPISSSLSTYSSSVIPSSSTLVSSSSSLIVSSSPVASSSSSPIPSSSSLVSTY 709
Query: 401 RKVLS 415
LS
Sbjct: 710 SASLS 714
Score = 27.1 bits (57), Expect = 2.1
Identities = 23/97 (23%), Positives = 38/97 (39%)
Frame = +2
Query: 92 SCTSRPDNAETRLELSSGRSSPMSTASTPPVLTTATQTCSWSASMFITMRXXXXXXXXXX 271
S S P ++ + + S+ SS S +S L+T+++ S +S T+
Sbjct: 466 SSVSVPSSSSVQPQSSTPISSSSSASSPQSTLSTSSEVVSEVSS---TLLSGSSAIPSTS 522
Query: 272 XXXXXXXXXXXXXXRDPSDRSSAPTTSFSDSPAPVTT 382
S SS PT+S SD + +TT
Sbjct: 523 SSTPSSSIISSPMTSVLSSSSSIPTSSSSDFSSSITT 559
>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 428
Score = 27.1 bits (57), Expect = 2.1
Identities = 10/34 (29%), Positives = 22/34 (64%)
Frame = +1
Query: 121 NQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERI 222
N++G E+++++ +DPT A + DLQ++ +
Sbjct: 133 NELGENEEEVLTEQKQLDPTLAAKKELDLQMDAV 166
>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 577
Score = 27.1 bits (57), Expect = 2.1
Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = +2
Query: 467 VYKD-SNSHTPSEAVLAPVWAPFSSLKY 547
VYK S HT S L +W PFS L Y
Sbjct: 238 VYKTISPLHTQSTDKLYTIWTPFSELHY 265
>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
Pof11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 506
Score = 26.6 bits (56), Expect = 2.8
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +1
Query: 316 GPFGQIFRPDNFVFGQSGAG-NNWAKGHYTEGAEL 417
GP+G +F P F+F +G NW+ Y E A L
Sbjct: 157 GPYGTMFLPQQFIFDSNGRPLLNWSY-LYKEHAHL 190
>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 997
Score = 26.2 bits (55), Expect = 3.7
Identities = 19/53 (35%), Positives = 27/53 (50%)
Frame = -2
Query: 177 GVDAVLIGDDLPELSSNLVSALSGLDVHDFPHFDISELNKLLNTNIFCSARTT 19
G+D +IG+D E S L S L+ LD P++ I N NT + +A T
Sbjct: 176 GIDIRIIGNDAGEKLSILSSTLARLD-RPAPNYGIDNYND-FNTFYYQAASGT 226
>SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 234
Score = 26.2 bits (55), Expect = 3.7
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +1
Query: 385 AKGHYTEGAELVDSVLDVVRKEAESCDCLQ 474
A+GH G ELV + D +RK++E+ L+
Sbjct: 183 AEGHPDVGVELVRAGADTLRKDSENHTALE 212
>SPAC1805.16c |||purine nucleoside phosphorylase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 315
Score = 26.2 bits (55), Expect = 3.7
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -2
Query: 168 AVLIGDDLPELSSNLVSALSGLDVHDFPHFDISEL 64
A++ G L L+S L + + + D PHF +S +
Sbjct: 44 AIICGSGLGTLASGLSAPVYEVPYEDIPHFHVSHV 78
>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
2|||Manual
Length = 807
Score = 25.8 bits (54), Expect = 4.9
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = -3
Query: 458 DSASLRTTSKTESTSSAPSV*CPLAQLLPAPDCPKTKLSGRKICPK 321
++A+ RTTS T+ +PS L P P + S R+ CPK
Sbjct: 390 NAAADRTTSPTQGQPESPS---KSILLRPPPSIASSPESKRRKCPK 432
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 25.8 bits (54), Expect = 4.9
Identities = 12/44 (27%), Positives = 20/44 (45%)
Frame = +1
Query: 337 RPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDC 468
RP +F G++ G + E D ++ + + ESCDC
Sbjct: 955 RPSRLIF-YDNCGDSSGAGLCNKAYEHTDELITMAIERIESCDC 997
>SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 255
Score = 25.8 bits (54), Expect = 4.9
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -3
Query: 374 PAPDCPKTKLSGRKICPKGPERTESMVPGSRS 279
P+ PK L R I P GPE + + GS S
Sbjct: 20 PSTPPPKEVLHTRVIVPNGPEEIKLRLVGSHS 51
>SPAC29A4.11 |rga3||GTPase activating protein
Rga3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 969
Score = 25.0 bits (52), Expect = 8.6
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Frame = -3
Query: 482 WNPCKQSHDSASLRTTSKT----ESTSSAPSV*CPLAQLLPAPDCPKTKLSG 339
++P +S D+ S RT S + TSS PS AQLL P K +G
Sbjct: 355 FSPSYRSSDTHSPRTRSPNVQTHKKTSSQPSDLSSFAQLLSPPQVLSPKPNG 406
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,345,131
Number of Sequences: 5004
Number of extensions: 44616
Number of successful extensions: 163
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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