Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_B05
         (476 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2 |...    28   0.84 
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc...    25   5.9  
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc...    25   5.9  

>SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 652

 Score = 27.9 bits (59), Expect = 0.84
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = -2

Query: 328 IKNFFAAGFACMPETWAKVVANDGHYFDTYVRNRFVVKKHQIKK 197
           I +F+     C  +T    +AND H F+T+  NR   K    K+
Sbjct: 381 IVDFYLRYLYCKLQTQNPSLANDTHIFNTFFYNRLTSKDKDGKR 424


>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1063

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = -2

Query: 304 FACMPETWAKVVANDGHYFDTYVRNRFVVKKHQI 203
           F C P+T AK+      YF  +V+ + +   H++
Sbjct: 677 FTCAPQTLAKIKEKTSRYF-AFVKAQLLRLHHEV 709


>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
           4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 636

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 261 SLATTLAHVSGMQANPAAKKFFIFRV 338
           S ATT  H +G+ +NPAA    +  V
Sbjct: 155 STATTTPHKAGVVSNPAAANVHVLSV 180


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,915,976
Number of Sequences: 5004
Number of extensions: 35912
Number of successful extensions: 84
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 184476110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)